(Q34088553)

30 July 2017

title

Influence of DNA extraction and PCR amplification on studies of soil fungal communities based on amplicon sequencing (English)

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30 July 2017

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Lihui Xu

1

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30 July 2017

Sabine Ravnskov

series ordinal

2

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30 July 2017

John Larsen

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3

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30 July 2017

Mogens Nicolaisen

series ordinal

4

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30 July 2017

language of work or name

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1 December 2011

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Canadian Journal of Microbiology

30 July 2017

published in

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30 July 2017

volume

57

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30 July 2017

issue

12

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30 July 2017

page(s)

1062-1066

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

30 July 2017

cites work

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Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

21 January 2018

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ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

21 January 2018

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21 January 2018

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Defining operational taxonomic units using DNA barcode data

21 January 2018

1 reference

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

21 January 2018

1 reference

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

21 January 2018

1 reference

Assessment of bias associated with incomplete extraction of microbial DNA from soil.

21 January 2018

1 reference

Accuracy and quality of massively parallel DNA pyrosequencing

21 January 2018

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Ironing out the wrinkles in the rare biosphere through improved OTU clustering

21 January 2018

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Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

21 January 2018

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CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation

21 January 2018

1 reference

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

21 January 2018

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Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts

21 January 2018

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Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure

21 January 2018

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Soil bacterial and fungal communities across a pH gradient in an arable soil.

21 January 2018

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Progress towards DNA barcoding of fungi

21 January 2018

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454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

21 January 2018

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Species abundance distributions and richness estimations in fungal metagenomics--lessons learned from community ecology

21 January 2018

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Reproducibility and quantitation of amplicon sequencing-based detection

21 January 2018

1 reference

Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences

21 January 2018

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AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS

21 January 2018

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21 January 2018

Identifiers

DOI

10.1139/W11-100

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30 July 2017

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