(Q34094195)

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Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence

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Europe PubMed Central

PubMed publication ID

31 July 2017

Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence (English)

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Steven Salzberg

3

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Europe PubMed Central

PubMed publication ID

31 July 2017

author name string

S P Kennedy

1

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Europe PubMed Central

PubMed publication ID

31 July 2017

W V Ng

2

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Europe PubMed Central

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31 July 2017

L Hood

4

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Europe PubMed Central

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31 July 2017

S DasSarma

5

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Europe PubMed Central

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31 July 2017

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1 October 2001

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Europe PubMed Central

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31 July 2017

Genome Research

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Europe PubMed Central

PubMed publication ID

31 July 2017

11

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Europe PubMed Central

PubMed publication ID

31 July 2017

10

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

1641-1650

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Structural features that stabilize halophilic malate dehydrogenase from an archaebacterium

1 reference

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28 July 2018

Microbial genes in the human genome: lateral transfer or gene loss?

1 reference

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Retinylidene proteins: structures and functions from archaea to humans.

1 reference

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28 July 2018

Status of genome projects for nonpathogenic bacteria and archaea.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Genome sequence of Halobacterium species NRC-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

1 reference

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28 July 2018

Lateral gene transfer in prokaryotes

1 reference

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28 July 2018

Early fixation of an optimal genetic code

1 reference

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28 July 2018

Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker

1 reference

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28 July 2018

The COG database: a tool for genome-scale analysis of protein functions and evolution

1 reference

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28 July 2018

Whole genome-based phylogenetic analysis of free-living microorganisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Phylogenetic classification and the universal tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Genome phylogeny based on gene content

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Maximizing transcription efficiency causes codon usage bias

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Selfish operons: horizontal transfer may drive the evolution of gene clusters

1 reference

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28 July 2018

Asymmetric substitution patterns in the two DNA strands of bacteria

1 reference

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Structure and mechanism of DNA topoisomerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Halotolerance of Methanobacterium thermoautotrophicum delta H and Marburg

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Conservation of chromosomal arrangement among three strains of the genetically unstable archaeon Halobacterium salinarium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Wild-type gas vesicle formation requires at least ten genes in the gvp gene cluster of Halobacterium halobium plasmid pNRC100

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Correlation of GC content with replication timing and repair mechanisms in weakly expressed E.coli genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Life in unusual environments: progress in understanding the structure and function of enzymes from extreme halophilic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Unusual physical organization of the Halobacterium genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Base Sequence Homology and Renaturation Studies of the Deoxyribonucleic Acid of Extremely Halophilic Bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Photoreactivation in Halobacterium cutirubrum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Salt-dependent properties of proteins from extremely halophilic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Intracellular pH of halobacteria can be determined by the fluorescent dye 2′, 7′-bis(carboxyethyl)-5(6)-carboxyfluorescein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Genome organization in Halobacterium halobium: a 70 kb island of more (AT) rich DNA in the chromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Structure of the gas vesicle plasmid in Halobacterium halobium inversion isomers, inverted repeats, and insertion sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

DNA gyrase: structure and function.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 July 2018

Genomic and genetic dissection of an archaeal regulon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 October 2018

brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in Halobacterium salinarum

1 reference

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28 October 2018

The structural basis for the oriented assembly of a TBP/TFB/promoter complex

1 reference

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28 October 2018

Skewed oligomers and origins of replication.

1 reference

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28 October 2018

Electrostatic contributions to the stability of halophilic proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 October 2018

MucAB but not UmuDC proteins enhance -2 frameshift mutagenesis induced by N-2-acetylaminofluorene at alternating GC sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311145

28 October 2018

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1 reference

https://pubmed.ncbi.nlm.nih.gov/11591641

12 December 2020

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Compositional correlation studies among the three different codon positions in 12 bacterial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/11591641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of genomic G+C content on average amino-acid composition of proteins from 59 bacterial species

1 reference

https://pubmed.ncbi.nlm.nih.gov/11591641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?

1 reference

https://pubmed.ncbi.nlm.nih.gov/11591641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and analysis of the gas vesicle gene cluster on an unstable plasmid of Halobacterium halobium

1 reference

https://pubmed.ncbi.nlm.nih.gov/11591641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial Mode of Replication with Eukaryotic-Like Machinery in a Hyperthermophilic Archaeon

1 reference

https://pubmed.ncbi.nlm.nih.gov/11591641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Site-specific oxidation at GG and GGG sequences in double-stranded DNA by benzoyl peroxide as a tumor promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/11591641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biosynthesis of the purple membrane of halobacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/11591641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1101/GR.190201

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Europe PubMed Central

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31 July 2017

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31 July 2017

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31 July 2017

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