(Q34110769)

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Targeting of an interrupted polypurine:polypyrimidine sequence in mammalian cells by a triplex-forming oligonucleotide containing a novel base analogue

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Targeting of an interrupted polypurine:polypyrimidine sequence in mammalian cells by a triplex-forming oligonucleotide containing a novel base analogue (English)

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

author name string

A Semenyuk

1

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

E Darian

2

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

J Liu

3

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

A Majumdar

4

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

B Cuenoud

5

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

P S Miller

6

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

A D Mackerell

7

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

M M Seidman

8

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

language of work or name

0 references

publication date

1 September 2010

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

49

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

36

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

7867-7878

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Sequence conversion by single strand oligonucleotide donors via non-homologous end joining in mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Repair of DNA lesions associated with triplex-forming oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Selectivity and affinity of DNA triplex forming oligonucleotides containing the nucleoside analogues 2'-O-methyl-5-(3-amino-1-propynyl)uridine and 2'-O-methyl-5-propynyluridine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Targeted gene knock in and sequence modulation mediated by a psoralen-linked triplex-forming oligonucleotide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Extensive sugar modification improves triple helix forming oligonucleotide activity in vitro but reduces activity in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

An extra dimension in nucleic acid sequence recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

The development of bioactive triple helix-forming oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Scalable molecular dynamics with NAMD

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Triplex targeted genomic crosslinks enter separable deletion and base substitution pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Molecular recognition via triplex formation of mixed purine/pyrimidine DNA sequences using oligoTRIPs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Four base recognition by triplex-forming oligonucleotides at physiological pH.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Stable and selective recognition of three base pairs in the parallel triple-helical DNA binding motif

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Importance of clustered 2'-O-(2-aminoethyl) residues for the gene targeting activity of triple helix-forming oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

The potential for gene repair via triple helix formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Cell cycle modulation of gene targeting by a triple helix-forming oligonucleotide.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Locked nucleic acids: a promising molecular family for gene-function analysis and antisense drug development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Manipulating the mammalian genome by homologous recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Targeted gene knockout by 2'-O-aminoethyl modified triplex forming oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

2'-O,4'-C-Methylene bridged nucleic acid (2',4'-BNA): synthesis and triplex-forming properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Role of magnesium in genomic stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

DNA recognition by Cys2His2 zinc finger proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Towards mixed sequence recognition by triple helix formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Canonical dynamics: Equilibrium phase-space distributions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Persistent DNA damage inhibits S-phase and G2 progression, and results in apoptosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Triplex formation by oligonucleotides containing novel deoxycytidine derivatives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Stability of triple helices containing RNA and DNA strands: experimental and molecular modeling studies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Poly(pyrimidine) . poly(purine) synthetic DNAs containing 5-methylcytosine form stable triplexes at neutral pH

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Reversible G1 arrest in the cell cycle of human lymphoid cell lines by dimethyl sulfoxide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Sequence-specific recognition of double helical nucleic acids by proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

5 July 2018

Recognition of CG interrupting site by W-shaped nucleoside analogs (WNA) having the pyrazole ring in an anti-parallel triplex DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

28 October 2018

Recognition of T.A interruption by 2',4'-BNAs bearing heteroaromatic nucleobases through parallel motif triplex formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

28 October 2018

Targeted cross-linking of the human beta-globin gene in living cells mediated by a triple helix forming oligonucleotide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

28 October 2018

Recognition of CG inversions in DNA triple helices by methylated 3H-pyrrolo[2,3-d]pyrimidin-2(7H)-one nucleoside analogues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

28 October 2018

Stable recognition of TA interruptions by triplex forming oligonucleotides containing a novel nucleoside

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

28 October 2018

Gene targeting by triple helix-forming oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

28 October 2018

Binding of imidazole-derived nucleosides to a CG base pair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

28 October 2018

Stable oligonucleotide-directed triplex formation at target sites with CG interruptions: strong sequence-specific recognition by 2',4'-bridged nucleic-acid-containing 2-pyridones under physiological conditions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

28 October 2018

Minimum number of 2'-O-(2-aminoethyl) residues required for gene knockout activity by triple helix forming oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

28 October 2018

Determination of aliphatic side-chain conformation using cross-correlated relaxation: application to an extraordinarily stable 2'-aminoethoxy-modified oligonucleotide triplex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935506

28 October 2018

Selective recognition of a C-G base-pair in the parallel DNA triple-helical binding motif

1 reference

https://pubmed.ncbi.nlm.nih.gov/20701359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A 2′,4′-Bridged Nucleic Acid Containing 2-Pyridone as a Nucleobase: Efficient Recognition of a C⋅G Interruption by Triplex Formation with a Pyrimidine Motif

1 reference

https://pubmed.ncbi.nlm.nih.gov/20701359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stability and Properties of Double and Triple Helices: Dramatic Effects of RNA or DNA Backbone Composition

1 reference

https://pubmed.ncbi.nlm.nih.gov/20701359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stable triple helices are formed upon binding of RNA oligonucleotides and their 2'-O-methyl derivatives to double-helical DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/20701359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modification of the aromatic ring of the WNA analogues for expansion of the triplex recognition codes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20701359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dual Recognition of Double-Stranded DNA by 2'-Aminoethoxy-Modified Oligonucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/20701359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Refinement of protein conformations using a macromolecular energy minimization procedure

1 reference

https://pubmed.ncbi.nlm.nih.gov/20701359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeted gene knockout mediated by triple helix forming oligonucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/20701359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dual recognition of double-stranded DNA by 2'-aminoethoxy-modified oligonucleotides: the solution structure of an intramolecular triplex obtained by NMR spectroscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/20701359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI100797Z

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

release_z3zre6ypifakncxs2cepukrfky

1 reference

https://api.fatcat.wiki/v0/release/z3zre6ypifakncxs2cepukrfky

24 November 2022

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PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

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