(Q34129199)

31 July 2017

title

Comparison of rotation models for describing DNA conformations: application to static and polymorphic forms (English)

1 reference

31 July 2017

J Mazur

1

1 reference

31 July 2017

R L Jernigan

series ordinal

2

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 April 1995

1 reference

31 July 2017

1 reference

31 July 2017

volume

68

1 reference

31 July 2017

issue

4

1 reference

31 July 2017

page(s)

1472-1489

1 reference

The effect of mathematics and coordinate system on comparability and "dependencies" of nucleic acid structure parameters.

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Nucleic acid structure analysis. Mathematics for local Cartesian and helical structure parameters that are truly comparable between structures.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Nucleic acid structure analysis: a users guide to a collection of new analysis programs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Structure of a B-DNA dodecamer: conformation and dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Estimation of wedge components in curved DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

A rigorous basepair oriented description of DNA structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

A general procedure for generation of curved DNA molecules.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

The flexibility of the nucleic acids: (I). "SIR", a novel approach to the variation of polymer geometry in constrained systems.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Defining the structure of irregular nucleic acids: conventions and principles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Sequence dependence of DNA conformational flexibility

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

The Protein Data Bank: a computer-based archival file for macromolecular structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Symmetry and molecular structure of a DNA triple helix: d(T)n.d(A)n.d(T)n.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Configurational statistics of the DNA duplex: extended generator matrices to treat the rotations and translations of adjacent residues.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1282042

Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure

28 October 2018

1 reference

12 December 2020

Molecular mechanics calculations of dA12.dT12 and of the curved molecule d(GCTCGAAAAA)4.d(TTTTTCGAGC)4

1 reference

12 December 2020

Base sequence effects in double-helical DNA. III. Average properties of curved DNA

1 reference

12 December 2020

The translation of DNA primary base sequence into three-dimensional structure

1 reference

12 December 2020

Definitions and nomenclature of nucleic acid structure parameters

1 reference

12 December 2020

Sequence dependence of the B-A conformational transition of DNA

1 reference

12 December 2020

Simulation of interactions between nucleic acid bases by refined atom-atom potential functions

1 reference

12 December 2020

A self-consistent formulation for analysis and generation of non-uniform DNA structures

1 reference

12 December 2020

Distance-dependent dielectric constants and their application to double-helical DNA

1 reference

12 December 2020

A unique or essentially unique single parametric characterisation of biopolymeric structures

1 reference

12 December 2020

10.1016/S0006-3495(95)80320-6

Identifiers

DOI

1 reference

31 July 2017

1 reference

31 July 2017

1 reference