(Q34130507)

31 July 2017

title

T-Analyst: a program for efficient analysis of protein conformational changes by torsion angles (English)

1 reference

31 July 2017

Rizi Ai

1

1 reference

31 July 2017

M. Qaiser Fatmi

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20689979

17 June 2024

Chia-En A. Chang

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20689979

17 June 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20689979

17 June 2024

publication date

6 August 2010

1 reference

full work available at URL

31 July 2017

https://link.springer.com/content/pdf/10.1007/s10822-010-9376-y.pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20689979

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20689979/?tool=EBI

17 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20689979

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20689979/pdf/?tool=EBI

17 June 2024

file format

Portable Document Format

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20689979

https://europepmc.org/articles/PMC2940022

17 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20689979

https://europepmc.org/articles/PMC2940022?pdf=render

17 June 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20689979

http://www.springerlink.com/index/pdf/10.1007/s10822-010-9376-y

17 June 2024

1 reference

10.1007/S10822-010-9376-Y

Crossref

DOI

https://api.crossref.org/works/10.1007/S10822-010-9376-Y

Journal of Computer - Aided Molecular Design

17 June 2024

published in

1 reference

31 July 2017

volume

24

1 reference

31 July 2017

issue

10

1 reference

31 July 2017

page(s)

819-827

1 reference

https://scigraph.springernature.com/pub.10.1007/s10822-010-9376-y

31 July 2017

exact match

0 references

cites work

Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

5 July 2018

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Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles

5 July 2018

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Synergistic regulation and ligand-induced conformational changes of tryptophan synthase

5 July 2018

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Methods for calculating the entropy and free energy and their application to problems involving protein flexibility and ligand binding

5 July 2018

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5 July 2018

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Configurational entropy in protein-peptide binding: computational study of Tsg101 ubiquitin E2 variant domain with an HIV-derived PTAP nonapeptide

5 July 2018

1 reference

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Computations of standard binding free energies with molecular dynamics simulations

5 July 2018

1 reference

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Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms

5 July 2018

1 reference

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Allostery and cooperativity revisited

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940022

Entropic contributions and the influence of the hydrophobic environment in promiscuous protein-protein association

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940022

Allostery: absence of a change in shape does not imply that allostery is not at play

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940022

Structure and mechanistic implications of a tryptophan synthase quinonoid intermediate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940022

Flexible ligand docking to multiple receptor conformations: a practical alternative

5 July 2018

1 reference

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An improved relaxed complex scheme for receptor flexibility in computer-aided drug design

5 July 2018

1 reference

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Flexible ligand-flexible protein docking in protein kinase systems

5 July 2018

1 reference

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Allosteric regulation of substrate channeling in tryptophan synthase: modulation of the L-serine reaction in stage I of the beta-reaction by alpha-site ligands

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940022

Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures

5 July 2018

1 reference

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Automatic atom type and bond type perception in molecular mechanical calculations

5 July 2018

1 reference

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HIV-1 protease flaps spontaneously open and reclose in molecular dynamics simulations

5 July 2018

1 reference

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Scalable molecular dynamics with NAMD

5 July 2018

1 reference

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The GROMOS software for biomolecular simulation: GROMOS05.

5 July 2018

1 reference

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GROMACS: fast, flexible, and free

5 July 2018

1 reference

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5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940022

Molecular dynamics simulations of proteins in lipid bilayers

5 July 2018

1 reference

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The role of dynamics in allosteric regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940022

Molecular dynamics simulations of biomolecules

5 July 2018

1 reference

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5 July 2018

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1 reference

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Native protein sequences are close to optimal for their structures

5 July 2018

1 reference

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Accommodating protein flexibility in computational drug design

5 July 2018

1 reference

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VMD: visual molecular dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940022

Bio3d: an R package for the comparative analysis of protein structures.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940022

Tork: Conformational analysis method for molecules and complexes

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940022

28 October 2018

Molecular Pharmacology

10

57

213

HA Carlson

2000

1 reference

10.1007/S10822-010-9376-Y

Crossref

DOI

https://api.crossref.org/works/10.1007/S10822-010-9376-Y

10.1007/S10822-010-9376-Y

17 June 2024

Identifiers

DOI

1 reference

31 July 2017

DBLP publication ID

journals/jcamd/AiFC10

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

31 July 2017

1 reference