(Q34131312)

31 July 2017

title

Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes (English)

1 reference

31 July 2017

1 reference

Min Zhang

1

1 reference

31 July 2017

Lin Zhang

2

1 reference

31 July 2017

Jinfeng Zou

3

1 reference

31 July 2017

Chen Yao

4

1 reference

31 July 2017

Hui Xiao

5

1 reference

31 July 2017

Qing Liu

6

1 reference

31 July 2017

Jing Wang

7

1 reference

31 July 2017

Dong Wang

8

1 reference

31 July 2017

Chenguang Wang

9

1 reference

31 July 2017

Zheng Guo

10

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31 July 2017

language of work or name

English

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publication date

5 May 2009

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31 July 2017

number of pages

7

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inferred from page(s)

published in

Bioinformatics

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31 July 2017

volume

25

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31 July 2017

issue

13

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31 July 2017

page(s)

1662-1668

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Evaluation of inter-laboratory and cross-platform concordance of DNA microarrays through discriminating genes and classifier transferability.

31 July 2017

cites work

1 reference

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Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories

5 July 2018

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Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

A multivariate extension of the gene set enrichment analysis.

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

A comprehensive evaluation of SAM, the SAM R-package and a simple modification to improve its performance

5 July 2018

1 reference

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Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

GO-2D: identifying 2-dimensional cellular-localized functional modules in Gene Ontology

5 July 2018

1 reference

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Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Rat toxicogenomic study reveals analytical consistency across microarray platforms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Evaluation of external RNA controls for the assessment of microarray performance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

5 July 2018

1 reference

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A new type of stochastic dependence revealed in gene expression data

5 July 2018

1 reference

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Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer

5 July 2018

1 reference

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Assessing stability of gene selection in microarray data analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

5 July 2018

1 reference

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A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

The effects of normalization on the correlation structure of microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Outcome signature genes in breast cancer: is there a unique set?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Gene expression profiling identifies clinically relevant subtypes of prostate cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Identifying biological themes within lists of genes with EASE

5 July 2018

1 reference

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Evaluation of gene expression measurements from commercial microarray platforms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

A comparison of parametric versus permutation methods with applications to general and temporal microarray gene expression data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Gene expression comparison of biopsies from Duchenne muscular dystrophy (DMD) and normal skeletal muscle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Diversity of gene expression in adenocarcinoma of the lung

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses

5 July 2018

1 reference

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Missing value estimation methods for DNA microarrays

5 July 2018

1 reference

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Significance analysis of microarrays applied to the ionizing radiation response

5 July 2018

1 reference

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Apparently low reproducibility of true differential expression discoveries in microarray studies.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Lessons from controversy: ovarian cancer screening and serum proteomics.

28 October 2018

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Microarray reality checks in the context of a complex disease

28 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Gene expression profiling in the early phases of DMD: a constant molecular signature characterizes DMD muscle from early postnatal life throughout disease progression

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Multiple-laboratory comparison of microarray platforms

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940240

Statistical methods and microarray data

28 October 2018

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12 December 2020

Gene expression correlates of clinical prostate cancer behavior

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12 December 2020

Rules of evidence for cancer molecular-marker discovery and validation

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12 December 2020

Getting the noise out of gene arrays

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12 December 2020

Prediction of cancer outcome with microarrays: a multiple random validation strategy

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12 December 2020

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12 December 2020

10.1093/BIOINFORMATICS/BTP295

Identifiers

DOI

1 reference

journals/bioinformatics/ZhangZZYXLWWWG09

31 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

31 July 2017

1 reference