(Q34131691)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

title

Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

1 reference

Evolutionary dynamics

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

author name string

Paulina D Pavinski Bitar

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

Haruo Suzuki

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

Michael J Stanhope

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

publication date

4 August 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

Genome Biology and Evolution

9 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

page(s)

646-655

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

Assembly complexity of prokaryotic genomes using short reads

9 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

The Pfam protein families database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Investigation of food and environmental exposures relating to the epidemiology of Campylobacter coli in humans in Northwest England

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

The interplay of homologous recombination and horizontal gene transfer in bacterial speciation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Estimating the size of the bacterial pan-genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Comparative genomics: the bacterial pan-genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Accurate whole human genome sequencing using reversible terminator chemistry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

The GOA database in 2009--an integrated Gene Ontology Annotation resource

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

InterPro: the integrative protein signature database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Mapping short DNA sequencing reads and calling variants using mapping quality scores

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

A probabilistic model of local sequence alignment that simplifies statistical significance estimation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Comparison of Campylobacter populations in wild geese with those in starlings and free-range poultry on the same farm.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Host-associated genetic import in Campylobacter jejuni

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

UniRef: comprehensive and non-redundant UniProt reference clusters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Identifying bacterial genes and endosymbiont DNA with Glimmer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

A simple and robust statistical test for detecting the presence of recombination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Differentiation of campylobacter populations as demonstrated by flagellin short variable region sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Genome sequencing in microfabricated high-density picolitre reactors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Prevalence of Campylobacter jejuni, Campylobacter lari, and Campylobacter coli in different ecological guilds and taxa of migrating birds

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Deletional bias and the evolution of bacterial genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

When does a clone deserve a name? A perspective on bacterial species based on population genetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Intraspecies variation in bacterial genomes: the need for a species genome concept

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Gene ontology: tool for the unification of biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Pathogenesis of enteric infection by Campylobacter

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

The effect of DNA sequence divergence on sexual isolation in Bacillus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

The log-linear relationship between sexual isolation and sequence divergence in Bacillus transformation is robust.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Codon usage in bacteria: correlation with gene expressivity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Isolation and characterization of Campylobacter jejuni and Campylobacter coli from domestic and wild mammals in Norway

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Recombination in Escherichia coli and the definition of biological species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Analyzing the mosaic structure of genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940326

Sources of Campylobacter spp. colonizing housed broiler flocks during rearing

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ048

Genomic insights into the convergence and pathogenicity factors of Campylobacter jejuni and Campylobacter coli species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ048

Evolutionary implications of the frequent horizontal transfer of mismatch repair genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ048

Probabilistic phylogenetic inference with insertions and deletions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ048

Isolation and characterization of bacteriophages specific for Campylobacter jejuni.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ048

Codon usages in different gene classes of the Escherichia coli genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ048

GARD: a genetic algorithm for recombination detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ048

Identification of host-associated alleles by multilocus sequence typing of Campylobacter coli strains from food animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ048

Convergence of Campylobacter species: implications for bacterial evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ048

Variation of the natural transformation frequency of Campylobacter jejuni in liquid shake culture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ048

Diversity within the Campylobacter jejuni type I restriction-modification loci

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20688752

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVQ048

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20688752%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

1 reference