(Q34132546)

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Towards structural genomics of RNA: rapid NMR resonance assignment and simultaneous RNA tertiary structure determination using residual dipolar couplings

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scholarly article

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Europe PubMed Central

31 July 2017

Towards structural genomics of RNA: rapid NMR resonance assignment and simultaneous RNA tertiary structure determination using residual dipolar couplings (English)

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Europe PubMed Central

31 July 2017

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author name string

Hashim M Al-Hashimi

1

1 reference

Europe PubMed Central

31 July 2017

Andrey Gorin

2

1 reference

Europe PubMed Central

31 July 2017

Ananya Majumdar

3

1 reference

Europe PubMed Central

31 July 2017

Yuying Gosser

4

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Europe PubMed Central

31 July 2017

Dinshaw J Patel

5

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Europe PubMed Central

31 July 2017

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1 May 2002

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Europe PubMed Central

31 July 2017

number of pages

13

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Journal of Molecular Biology

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Europe PubMed Central

31 July 2017

318

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Europe PubMed Central

31 July 2017

3

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Europe PubMed Central

31 July 2017

637-649

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Europe PubMed Central

31 July 2017

A tour of structural genomics.

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High-throughput three-dimensional protein structure determination.

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Nuclear magnetic resonance in the era of structural genomics

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Protein NMR spectroscopy in structural genomics

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Protein structure prediction and structural genomics

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Recent advances in RNA-protein recognition.

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Adaptive recognition by nucleic acid aptamers

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Strategies for the Design of Drugs Targeting RNA and RNA-Protein Complexes

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Structural genomics of RNA.

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Residual dipolar couplings: synergy between NMR and structural genomics

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Completeness in structural genomics.

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Calculating nucleic acid secondary structure.

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An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

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Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution

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Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium

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NMR structures of biomolecules using field oriented media and residual dipolar couplings

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Dipolar couplings in macromolecular structure determination

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NMR solution structure determination of RNAs

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Structural and dynamic analysis of residual dipolar coupling data for proteins

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NMR methodology for the study of nucleic acids.

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Order matrix analysis of residual dipolar couplings using singular value decomposition.

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Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings

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Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings.

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Structural motifs in RNA.

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

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Structure of the 30S ribosomal subunit

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Atomic structures at last: the ribosome in 2000.

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Regulation of mRNA accumulation by a human immunodeficiency virus trans-activator protein

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Single-Step Determination of Protein Substructures Using Dipolar Couplings: Aid to Structural Genomics

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A dipolar coupling based strategy for simultaneous resonance assignment and structure determination of protein backbones

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

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The crystal structure of UUCG tetraloop

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Resonance assignment and structure determination for RNA.

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Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions

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NMR scalar couplings across Watson-Crick base pair hydrogen bonds in DNA observed by transverse relaxation-optimized spectroscopy

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Scalar couplings across hydrogen bonds.

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Identifying hydrogen bond alignments in multistranded DNA architectures by NMR.

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1H-1H correlations across N-H...N hydrogen bonds in nucleic acids

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Refinement of local and long-range structural order in theophylline-binding RNA using (13)C-(1)H residual dipolar couplings and restrained molecular dynamics

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Rapid determination of protein folds using residual dipolar couplings

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Measurement of small scalar and dipolar couplings in purine and pyrimidine bases

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Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge

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Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

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The bend in RNA created by the trans-activation response element bulge of human immunodeficiency virus is straightened by arginine and by Tat-derived peptide

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Characterization of the solution conformations of unbound and Tat peptide-bound forms of HIV-1 TAR RNA

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Filamentous bacteriophage for aligning RNA, DNA, and proteins for measurement of nuclear magnetic resonance dipolar coupling interactions

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Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra

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Novel 2D and 3D multiple-quantum bi-directional HCNCH experiments for the correlation of ribose and base protons/carbons in 13C/15N labeled RNA.

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Pulse sequences for detection of NH2...N hydrogen bonds in sheared G . A mismatches via remote, non-exchangeable protons

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Observation of internucleotide NH...N hydrogen bonds in the absence of directly detectable protons

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Detection of N-H...N hydrogen bonding in RNA via scalar couplings in the absence of observable imino proton resonances

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Identifiers

10.1016/S0022-2836(02)00160-2

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

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