(Q34170257)

31 July 2017

title

Beyond transcriptional silencing: is methylcytosine a widely conserved eukaryotic DNA elimination mechanism? (English)

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31 July 2017

John R Bracht

1

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31 July 2017

language of work or name

English

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publication date

12 February 2014

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31 July 2017

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31 July 2017

volume

36

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31 July 2017

issue

4

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31 July 2017

page(s)

346-352

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5-Hydroxymethylcytosine: generation, fate, and genomic distribution

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

A permissive chromatin structure is adopted prior to site-specific DNA demethylation of developmentally expressed genes involved in macronuclear differentiation

5 July 2018

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The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Genomes on the edge: programmed genome instability in ciliates

5 July 2018

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Transcriptional silencing of transposons by Piwi and maelstrom and its impact on chromatin state and gene expression

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Role of ATG8 and autophagy in programmed nuclear degradation in Tetrahymena thermophila

5 July 2018

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GADD45α inhibition of DNMT1 dependent DNA methylation during homology directed DNA repair

5 July 2018

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Epigenetic regulation of motor neuron cell death through DNA methylation

5 July 2018

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Zygotic expression of the double-stranded RNA binding motif protein Drb2p is required for DNA elimination in the ciliate Tetrahymena thermophila

5 July 2018

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DNA rearrangements directed by non-coding RNAs in ciliates

5 July 2018

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Estimating the timing of early eukaryotic diversification with multigene molecular clocks

5 July 2018

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Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine

5 July 2018

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CpG islands and the regulation of transcription

5 July 2018

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Evolution of eukaryotic DNA methylation and the pursuit of safer sex.

5 July 2018

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Conservation and divergence of methylation patterning in plants and animals

5 July 2018

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Genome-wide evolutionary analysis of eukaryotic DNA methylation.

5 July 2018

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Establishing, maintaining and modifying DNA methylation patterns in plants and animals

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters.

5 July 2018

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Common themes in siRNA-mediated epigenetic silencing pathways.

5 July 2018

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Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

5 July 2018

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Spatial and temporal plasticity of chromatin during programmed DNA-reorganization in Stylonychia macronuclear development.

5 July 2018

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A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice

5 July 2018

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DNA damage, homology-directed repair, and DNA methylation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

DNA methylation and apoptosis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Histone H3 lysine 9 methylation is required for DNA elimination in developing macronuclei in Tetrahymena.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

De novo cytosine methylation in the differentiating macronucleus of the stichotrichous ciliate Stylonychia lemnae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Methylation of histone h3 at lysine 9 targets programmed DNA elimination in tetrahymena

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

BRCA1 regulates GADD45 through its interactions with the OCT-1 and CAAT motifs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Genome gymnastics: unique modes of DNA evolution and processing in ciliates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

A novel chromodomain protein, pdd3p, associates with internal eliminated sequences during macronuclear development in Tetrahymena thermophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

A nuclear protein involved in apoptotic-like DNA degradation in Stylonychia: implications for similar mechanisms in differentiating and starved cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Tumor suppressor p53 can participate in transcriptional induction of the GADD45 promoter in the absence of direct DNA binding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Pdd1p associates with germline-restricted chromatin and a second novel anlagen-enriched protein in developmentally programmed DNA elimination structures.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Pdd1p, a novel chromodomain-containing protein, links heterochromatin assembly and DNA elimination in Tetrahymena

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Biology of DNA restriction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Developmental precise excision of Oxytricha trifallax telomere-bearing elements and formation of circles closed by a copy of the flanking target duplication

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

( 6 N)methyl adenine in the nuclear DNA of a eucaryote, Tetrahymena pyriformis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Programmed nuclear death: apoptotic-like degradation of specific nuclei in conjugating Tetrahymena

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Molecular basis of base substitution hotspots in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Macronuclear DNA of the hypotrichous ciliate Oxytricha fallax

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4162090

Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis

5 July 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201300123

Parental expression of the chromodomain protein Pdd1p is required for completion of programmed DNA elimination and nuclear differentiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201300123

Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201300123

Lysosomal enzymes in the macronucleus of Tetrahymena during its apoptosis-like degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201300123

DAP-kinase loss of expression in various carcinoma and B-cell lymphoma cell lines: possible implications for role as tumor suppressor gene

21 January 2018

1 reference

12 December 2020

5′-Methyl-cytosine in the macronulear DNA ofBlepharisma japonicum

1 reference

12 December 2020

Macronuclear DNA demethylation is involved in the encystment process of the ciliate Colpoda inflata

1 reference

12 December 2020

Methylated bases in the DNA of the ciliate Stylonychia mytilus

1 reference

12 December 2020

5-Azacytidine affects the programming of expression of the somatic nucleus of Paramecium

1 reference

12 December 2020

DNA of ciliated protozoa: DNA sequence diminution during macronuclear development of Oxytricha

1 reference

12 December 2020

Elimination of germ-line tandemly repeated sequences from the somatic genome of the ciliate Oxytricha fallax

1 reference

12 December 2020

Methylated bases in DNA from Paramecium aurelia

1 reference

12 December 2020

Identifiers

DOI

10.1002/BIES.201300123

1 reference

31 July 2017

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31 July 2017

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