(Q34171413)

31 July 2017

title

Sodium and chlorine ions as part of the DNA solvation shell (English)

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31 July 2017

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Feig M

1

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31 July 2017

Pettitt BM

series ordinal

2

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31 July 2017

language of work or name

English

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publication date

1 October 1999

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31 July 2017

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31 July 2017

volume

77

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31 July 2017

issue

4

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31 July 2017

page(s)

1769-1781

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Relative binding affinities of monovalent cations for double-stranded DNA.

31 July 2017

cites work

1 reference

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The importance of coulombic end effects: experimental characterization of the effects of oligonucleotide flanking charges on the strength and salt dependence of oligocation (L8+) binding to single-stranded DNA oligomers

5 July 2018

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Diffusion of solvent around biomolecular solutes: a molecular dynamics simulation study

5 July 2018

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Structural equilibrium of DNA represented with different force fields

5 July 2018

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The B-DNA dodecamer at high resolution reveals a spine of water on sodium

5 July 2018

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Insight into the stabilization of A-DNA by specific ion association: spontaneous B-DNA to A-DNA transitions observed in molecular dynamics simulations of d[ACCCGCGGGT]2 in the presence of hexaamminecobalt(III).

5 July 2018

1 reference

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Crystal structures of A-DNA duplexes

5 July 2018

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Modeling DNA in aqueous solutions: theoretical and computer simulation studies on the ion atmosphere of DNA.

5 July 2018

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The effect of nucleic acid geometry on counterion association.

5 July 2018

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Hydration of the DNA bases is local

5 July 2018

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The crystal structure of the trigonal decamer C-G-A-T-C-G-6meA-T-C-G: a B-DNA helix with 10.6 base-pairs per turn

5 July 2018

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The effect of a variable dielectric coefficient and finite ion size on Poisson-Boltzmann calculations of DNA-electrolyte systems

5 July 2018

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Importance of coulombic end effects on cation accumulation near oligoelectrolyte B-DNA: a demonstration using 23Na NMR.

5 July 2018

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Grand canonical Monte Carlo molecular and thermodynamic predictions of ion effects on binding of an oligocation (L8+) to the center of DNA oligomers

5 July 2018

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Hydration of proteins. A comparison of experimental residence times of water molecules solvating the bovine pancreatic trypsin inhibitor with theoretical model calculations

5 July 2018

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Salt effects on nucleic acids

5 July 2018

1 reference

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Ion transport in the gramicidin channel: molecular dynamics study of single and double occupancy

5 July 2018

1 reference

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Salt effects on ligand-DNA binding. Minor groove binding antibiotics.

5 July 2018

1 reference

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Salt induced B----A transition of poly(dG).poly(dC) and the stabilization of A form by its methylation

5 July 2018

1 reference

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Structure and dynamics of water surrounding biomolecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300463

Crystal and molecular structure of the sodium salt of the dinucleotide duplex d(CpG).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300463

Monte Carlo description of oligoelectrolyte properties of DNA oligomers: range of the end effect and the approach of molecular and thermodynamic properties to the polyelectrolyte limits

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300463

The electrostatic potential of B-DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300463

Conformational analysis of d(C3G3), a B-family duplex in solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300463

Water: an integral part of nucleic acid structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300463

Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300463

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

5 July 2018

1 reference

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Sequence-specific recognition of double helical nucleic acids by proteins

5 July 2018

1 reference

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The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

5 July 2018

1 reference

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Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity

5 July 2018

1 reference

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Reconstructing the protein-water interface.

5 July 2018

1 reference

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Modeling the DNA-solvent interface.

28 October 2018

1 reference

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Valence screening of water in protein crystals reveals potential Na+ binding sites.

28 October 2018

1 reference

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23Na-NMR investigations of counterion exchange reactions of helical DNA.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300463

Raman spectra of single crystals of r(GCG)d(CGC) and d(CCCCGGGG) as models for A DNA, their structure transitions in aqueous solution, and comparison with double-helical poly(dG).poly(dC)

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

Molecular structure of a deoxyribose-dinucleotide, sodium thymidylyl-(5' yields to 3')-thymidylate-(5') hydrate (pTpT), and a possible structural model for polythymidylate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

Modeling high-resolution hydration patterns in correlation with DNA sequence and conformation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

Changes of hydration during conformational transitions of DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

Comparison of simple potential functions for simulating liquid water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

Monte Carlo calculations of ion distributions surrounding the oligonucleotide d(ATATATATAT)2 in the B, A, and wrinkled D conformations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

Conformational analysis of the octamer d(G-G-C-C-G-G-C-C) in aqueous solution. A one-dimensional and two-dimensional proton NMR study at 300 MHz and 500 MHz

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

RNA double-helical fragments at atomic resolution. II. The crystal structure of sodium guanylyl-3',5'-cytidine nonahydrate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

Determination of water structure around biomolecules using X-ray and neutron diffraction methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

Sodium ion and solvent nuclear relaxation results in aqueous solutions of DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

A duplex of the oligonucleotides d(GGGGGTTTTT) and d(AAAAACCCCC) forms an A to B conformational junction in concentrated salt solutions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977023-2

10.1016/S0006-3495(99)77023-2

7 January 2021

Identifiers

DOI

1 reference

31 July 2017

1 reference

31 July 2017

1 reference