(Q34179717)

31 July 2017

title

Thermodynamic and kinetic characterization of antisense oligodeoxynucleotide binding to a structured mRNA (English)

1 reference

31 July 2017

S Patrick Walton

1

1 reference

31 July 2017

Gregory N Stephanopoulos

series ordinal

2

1 reference

31 July 2017

Martin L Yarmush

series ordinal

3

1 reference

31 July 2017

Charles M Roth

series ordinal

4

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 January 2002

1 reference

31 July 2017

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31 July 2017

volume

82

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31 July 2017

issue

1 Pt 1

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31 July 2017

page(s)

366-377

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Nucleic acid biotechnology

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Rational selection and quantitative evaluation of antisense oligonucleotides.

5 July 2018

1 reference

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Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Antisense treatment directed against mutated Ki-ras in human colorectal adenocarcinoma

5 July 2018

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Catalysis by Escherichia coli ribonuclease HI is facilitated by a phosphate group of the substrate.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Rational selection of antisense oligonucleotide sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

RNA accessibility prediction: a theoretical approach is consistent with experimental studies in cell extracts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Two problems in antisense biotechnology: in vitro delivery and the design of antisense experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Thermodynamic parameters for DNA sequences with dangling ends

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Effects of RNA secondary structure on cellular antisense activity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Predicting oligonucleotide affinity to nucleic acid targets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

A theoretical approach to select effective antisense oligodeoxyribonucleotides at high statistical probability

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Prediction of antisense oligonucleotide binding affinity to a structured RNA target

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

RNA secondary structure prediction based on free energy and phylogenetic analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

5 July 2018

1 reference

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A dynamic programming algorithm for RNA structure prediction including pseudoknots

5 July 2018

1 reference

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RNA folding causes secondary structure rearrangement

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

A rapid in vitro method for obtaining RNA accessibility patterns for complementary DNA probes: correlation with an intracellular pattern and known RNA structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Selecting effective antisense reagents on combinatorial oligonucleotide arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Quantitative hybridization kinetics of DNA probes to RNA in solution followed by diffusional fluorescence correlation analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

"Well-determined" regions in RNA secondary structure prediction: analysis of small subunit ribosomal RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Inhibition of rabbit beta-globin synthesis by complementary oligonucleotides: identification of mRNA sites sensitive to inhibition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Enzymatic amplification of translation inhibition of rabbit beta-globin mRNA mediated by anti-messenger oligodeoxynucleotides covalently linked to intercalating agents

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Improved predictions of secondary structures for RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

On finding all suboptimal foldings of an RNA molecule

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Specific regulation of gene expression by antisense, sense and antigene nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Implication of RNA structure on antisense oligonucleotide hybridization kinetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

An RNA folding method capable of identifying pseudoknots and base triples.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Implications of RNA structure on the annealing of a potent antisense RNA directed against the human immunodeficiency virus type 1.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Computer-aided search for effective antisense RNA target sequences of the human immunodeficiency virus type 1.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302476

Mapping of RNA accessible sites for antisense experiments with oligonucleotide libraries

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975401-5

Prediction of antisense oligonucleotide efficacy by in vitro methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975401-5

Determining the influence of structure on hybridization using oligonucleotide arrays

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975401-5

Theoretical and experimental selection parameters for HBV-directed antisense RNA are related to increased RNA-RNA annealing

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975401-5

Improved nearest-neighbor parameters for predicting DNA duplex stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975401-5

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975401-5

Combinatorial screening and rational optimization for hybridization to folded hepatitis C virus RNA of oligonucleotides with biological antisense activity

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11751323

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(02)75401-5

1 reference

31 July 2017

1 reference

31 July 2017

1 reference