(Q34186238)

31 July 2017

title

Prediction of hybridization and melting for double-stranded nucleic acids (English)

1 reference

31 July 2017

Roumen A Dimitrov

1

1 reference

31 July 2017

Michael Zuker

series ordinal

2

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 July 2004

1 reference

31 July 2017

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31 July 2017

volume

87

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31 July 2017

issue

1

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31 July 2017

page(s)

215-226

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Sequence alignments in the neighborhood of the optimum with general application to dynamic programming

31 July 2017

cites work

1 reference

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Experimental annotation of the human genome using microarray technology

5 July 2018

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A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques

5 July 2018

1 reference

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Predicting sequence-dependent melting stability of short duplex DNA oligomers

5 July 2018

1 reference

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A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

5 July 2018

1 reference

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RNAdraw: an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows.

5 July 2018

1 reference

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Solvent effects on the kinetics and thermodynamics of stacking in poly(cytidylic acid)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

A 300 MHz proton nuclear magnetic resonance investigation of deoxyribonucleic acid restriction fragments: dynamic properties

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Thermodynamics of oligo (A) N -2poly(U) from the dependence of the temperature of the helix-coil transition on oligomer concentration.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Free energy of imperfect nucleic acid helices. II. Small hairpin loops

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Stability of ribonucleic acid double-stranded helices

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Recursion relation generation of probability profiles for specific-sequence macromolecules with long-range correlations.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Solvent effects on the stability of A7U7p.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

A dynamic programming algorithm for finding alternative RNA secondary structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Effects of base sequence on the loop folding in DNA hairpins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Absorbance melting curves of RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Computer prediction of RNA structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

On finding all suboptimal foldings of an RNA molecule

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Thermodynamic stability of the 5' dangling-ended DNA hairpins formed from sequences 5'-(XY)2GGATAC(T)4GTATCC-3', where X, Y = A, T, G, C.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Thermodynamic characterization of deoxyribooligonucleotide duplexes containing bulges.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Calorimetry: a tool for DNA and ligand-DNA studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Calorimetric and spectroscopic investigation of the helix-to-coil transition of a ribo-oligonucleotide: rA7U7

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Theory of DNA melting curves

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Immobilized RNA switches for the analysis of complex chemical and biological mixtures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304344

Theory of the Effects of Concentration and Chain Length on Helix—Coil Equilibria in Two-Stranded Nucleic Acids

28 October 2018

1 reference

12 December 2020

Thermodynamics of (dG-dC)3 double-helix formation in water and deuterium oxide

1 reference

12 December 2020

Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: interpretation in terms of coupled processes of formation and association of single-stranded helices

1 reference

12 December 2020

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

1 reference

12 December 2020

Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid

1 reference

12 December 2020

Differential hydration of dA.dT base pairing and dA and dT bulges in deoxyoligonucleotides

1 reference

12 December 2020

Thermodynamics and NMR of internal G.T mismatches in DNA

1 reference

12 December 2020

Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes

1 reference

12 December 2020

10.1529/BIOPHYSJ.103.020743

Identifiers

DOI

1 reference

release_oeeovbjxune6zcy6uiqvcqe7bm

31 July 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/oeeovbjxune6zcy6uiqvcqe7bm

24 November 2022

mapped directly with Wikidata item

PMC publication ID

1304344

1 reference

31 July 2017

1 reference