(Q34189605)

31 July 2017

title

Improving mass defect filters for human proteins (English)

1 reference

31 July 2017

Improving Mass Defect Filters for Human Proteins (English)

1 reference

21 June 2024

author name string

Heather Desaire

2

1 reference

31 July 2017

Melinda L. Toumi

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20731397

21 June 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20731397

21 June 2024

publication date

1 October 2010

1 reference

full work available at URL

31 July 2017

https://europepmc.org/articles/pmc2952931?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20731397

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20731397/?tool=EBI

21 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20731397

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20731397/pdf/?tool=EBI

21 June 2024

file format

Portable Document Format

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20731397

https://europepmc.org/articles/PMC2952931

21 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20731397

https://europepmc.org/articles/PMC2952931?pdf=render

21 June 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20731397

https://doi.org/10.1021/pr100291q

21 June 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20731397

https://pubs.acs.org/doi/pdf/10.1021/pr100291q

21 June 2024

1 reference

Journal of Proteome Research

21 June 2024

published in

1 reference

31 July 2017

volume

9

1 reference

31 July 2017

issue

10

1 reference

31 July 2017

page(s)

5492-5495

1 reference

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Two dimensional mass mapping as a general method of data representation in comprehensive analysis of complex molecular mixtures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

A novel approach to denoising ion trap tandem mass spectra

5 July 2018

1 reference

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Rapid detection and characterization of reactive drug metabolites in vitro using several isotope-labeled trapping agents and ultra-performance liquid chromatography/time-of-flight mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Precision proteomics: the case for high resolution and high mass accuracy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

NITPICK: peak identification for mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Application of fractional mass for the identification of peptide-oligonucleotide cross-links by mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Analytical model of peptide mass cluster centres with applications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Detection and characterization of metabolites in biological matrices using mass defect filtering of liquid chromatography/high resolution mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Probabilistic enrichment of phosphopeptides by their mass defect

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Enhanced peptide mass fingerprinting through high mass accuracy: Exclusion of non-peptide signals based on residual mass

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Automated methods for improved protein identification by peptide mass fingerprinting

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

A comprehensive characterization of the peptide and protein constituents of human seminal fluid

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

The human plasma proteome: a nonredundant list developed by combination of four separate sources

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Kendrick mass defect spectrum: a compact visual analysis for ultrahigh-resolution broadband mass spectra

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

On-line capillary liquid chromatography tandem mass spectrometry on an ion trap/reflectron time-of-flight mass spectrometer using the sequence tag database search approach for peptide sequencing and protein identification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Modeling peptide mass fingerprinting data using the atomic composition of peptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Quantile distributions of amino acid usage in protein classes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Generic dealkylation: a tool for increasing the hit-rate of metabolite rationalization, and automatic customization of mass defect filters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Protease-dependent fractional mass and peptide properties.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Cyclophosphoramidate ion as mass defect marker for efficient detection of protein serine phosphorylation

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Averagine-scaling analysis and fragment ion mass defect labeling in peptide mass spectrometry

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Trypsin cleaves exclusively C-terminal to arginine and lysine residues

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Unmatched masses in peptide mass fingerprints caused by cross-contamination: an updated statistical result

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952931

Determination of monoisotopic masses and ion populations for large biomolecules from resolved isotopic distributions

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20731397

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A Mass Scale Based on CH2 = 14.0000 for High Resolution Mass Spectrometry of Organic Compounds.

1

1 reference

Nonpolar Compositional Analysis of Vacuum Gas Oil Distillation Fractions by Electron Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

21 June 2024

5

1 reference

21 June 2024

Identifiers

DOI

10.1021/PR100291Q

1 reference

31 July 2017

1 reference

31 July 2017

1 reference