(Q34190287)

31 July 2017

A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data (English)

1 reference

protein-protein interaction

31 July 2017

1 reference

1 reference

Min Li

1

1 reference

31 July 2017

Hanhui Zhang

series ordinal

2

1 reference

31 July 2017

Jian-xin Wang

series ordinal

3

1 reference

31 July 2017

Yi Pan

series ordinal

4

1 reference

31 July 2017

10 March 2012

1 reference

31 July 2017

1 reference

31 July 2017

6

1 reference

31 July 2017

15

1 reference

https://scigraph.springernature.com/pub.10.1186/1752-0509-6-15

31 July 2017

0 references

cites work

Leaders in social networks, the Delicious case

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Community landscapes: an integrative approach to determine overlapping network module hierarchy, identify key nodes and predict network dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Computational prediction of essential genes in an unculturable endosymbiotic bacterium, Wolbachia of Brugia malayi

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Identifying hubs in protein interaction networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

High-quality binary protein interaction map of the yeast interactome network

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Hubba: hub objects analyzer--a framework of interactome hubs identification for network biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Inferring topology from clustering coefficients in protein-protein interaction networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Evolutionary and physiological importance of hub proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Differences in the evolutionary history of disease genes affected by dominant or recessive mutations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Why do hubs tend to be essential in protein networks?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

MIPS: analysis and annotation of proteins from whole genomes in 2005.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Subgraph centrality in complex networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

High-betweenness proteins in the yeast protein interaction network

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Genome-wide screening for gene function using RNAi in mammalian cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Genomic analysis of essentiality within protein networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Bioinformatical assay of human gene morbidity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Defining and identifying communities in networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Large-scale essential gene identification in Candida albicans and applications to antifungal drug discovery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

A postgenomic method for predicting essential genes at subsaturation levels of mutagenesis: application to Mycobacterium tuberculosis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Functional profiling of the Saccharomyces cerevisiae genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Systematic screen for human disease genes in yeast

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Functional organization of the yeast proteome by systematic analysis of protein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Lethality and centrality in protein networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

DIP: the database of interacting proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

SGD: Saccharomyces Genome Database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

A local average connectivity-based method for identifying essential proteins from the network level.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-15

Functional topology in a network of protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-15

Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-15

Range-limited centrality measures in complex networks.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Parameterized centrality metric for network analysis

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Localized network centrality and essentiality in the yeast-protein interaction network.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3325894

Centers of complex networks

28 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-15

Protein complexes take the bait

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-6-15

Virtual identification of essential proteins within the protein interaction network of yeast

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22405054

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22405054

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1752-0509-6-15

1 reference

31 July 2017

journals/bmcsb/LiZWP12

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

31 July 2017

1 reference