(Q34201985)

31 July 2017

title

Probing conformational changes in T7 RNA polymerase during initiation and termination by using engineered disulfide linkages (English)

1 reference

31 July 2017

Kaiyu Ma

1

1 reference

31 July 2017

Dmitry Temiakov

series ordinal

2

1 reference

31 July 2017

Michael Anikin

series ordinal

3

1 reference

31 July 2017

William T McAllister

series ordinal

4

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31 July 2017

language of work or name

English

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publication date

21 November 2005

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31 July 2017

number of pages

6

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Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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31 July 2017

volume

102

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31 July 2017

issue

49

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31 July 2017

page(s)

17612-17617

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Sequential multiple functions of the conserved sequence in sequence-specific termination by T7 RNA polymerase

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Discontinuous movement and conformational change during pausing and termination by T7 RNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

RNA polymerase holoenzyme: structure, function and biological implications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Bacterial RNA polymerases: the wholo story

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Disulfide recognition in an optimized threading potential.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

The specificity loop of T7 RNA polymerase interacts first with the promoter and then with the elongating transcript, suggesting a mechanism for promoter clearance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Structure of a transcribing T7 RNA polymerase initiation complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Structural basis for initiation of transcription from an RNA polymerase-promoter complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

The mechanism of intrinsic transcription termination.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Characterization of an unusual, sequence-specific termination signal for T7 RNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Pausing and termination by bacteriophage T7 RNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Intrinsic termination of T7 RNA polymerase mediated by either RNA or DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

DNA-RNA hybrid duplexes containing oligo(dA:rU) sequences are exceptionally unstable and may facilitate termination of transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Single-stranded DNA 'blue' T7 promoter plasmids: a versatile tandem promoter system for cloning and protein engineering.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Processivity in early stages of transcription by T7 RNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Multiple roles of T7 RNA polymerase and T7 lysozyme during bacteriophage T7 infection

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0508865102

Mutant bacteriophage T7 RNA polymerases with altered termination properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0508865102

Scanning mutagenesis reveals roles for helix n of the bacteriophage T7 RNA polymerase thumb subdomain in transcription complex stability, pausing, and termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0508865102

Promoter clearance by T7 RNA polymerase. Initial bubble collapse and transcript dissociation monitored by base analog fluorescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0508865102

A mutant T7 RNA polymerase that is defective in RNA binding and blocked in the early stages of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0508865102

Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0508865102

Forward translocation is the natural pathway of RNA release at an intrinsic terminator

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0508865102

Crystallization and preliminary crystallographic analysis of T7 RNA polymerase elongation complex.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Transcription termination by bacteriophage T7 RNA polymerase at rho-independent terminators.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1308916

Interrupting the template strand of the T7 promoter facilitates translocation of the DNA during initiation, reducing transcript slippage and the release of abortive products

28 October 2018

1 reference

12 December 2020

Major conformational changes occur during the transition from an initiation complex to an elongation complex by T7 RNA polymerase

1 reference

12 December 2020

Characterization of T7 RNA polymerase transcription complexes assembled on nucleic acid scaffolds

1 reference

12 December 2020

RNA displacement and resolution of the transcription bubble during transcription by T7 RNA polymerase

1 reference

12 December 2020

Topological and conformational analysis of the initiation and elongation complex of t7 RNA polymerase suggests a new twist

1 reference

12 December 2020

Model for the mechanism of bacteriophage T7 RNAP transcription initiation and termination

1 reference

12 December 2020

Characterization of two types of termination signal for bacteriophage T7 RNA polymerase

1 reference

12 December 2020

Mechanism of inhibition of bacteriophage T7 RNA polymerase by T7 lysozyme

1 reference

12 December 2020

Bipartite modular structure of intrinsic, RNA hairpin-independent termination signal for phage RNA polymerases

1 reference

12 December 2020

Major conformational changes during T7RNAP transcription initiation coincide with, and are required for, promoter release

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0508865102

1 reference

31 July 2017

0 references

1 reference

31 July 2017

1 reference