(Q34208362)

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Direct probing of RNA structures and RNA-protein interactions in the HIV-1 packaging signal by chemical modification and electrospray ionization fourier transform mass spectrometry

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Europe PubMed Central

PubMed publication ID

31 July 2017

Direct probing of RNA structures and RNA-protein interactions in the HIV-1 packaging signal by chemical modification and electrospray ionization fourier transform mass spectrometry (English)

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Europe PubMed Central

PubMed publication ID

31 July 2017

electrospray ionization

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author name string

Eizadora Yu

1

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Europe PubMed Central

PubMed publication ID

31 July 2017

Daniele Fabris

2

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Europe PubMed Central

PubMed publication ID

31 July 2017

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publication date

1 July 2003

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Europe PubMed Central

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31 July 2017

Journal of Molecular Biology

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Europe PubMed Central

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31 July 2017

330

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Europe PubMed Central

PubMed publication ID

31 July 2017

2

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31 July 2017

211-223

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Europe PubMed Central

PubMed publication ID

31 July 2017

Cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1.

1 reference

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Chemical probes for higher-order structure in RNA

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Enzymatic and chemical structure mapping of mouse 28S ribosomal ribonucleic acid contacts in 5.8S ribosomal ribonucleic acid.

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Probing the structure of RNAs in solution

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Probing RNA structure and RNA-ligand complexes with chemical probes

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Modern methods for probing RNA structure.

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A guide for probing native small nuclear RNA and ribonucleoprotein structures

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Improved methods for structure probing in large RNAs: a rapid ‘heterologous’ sequencing approach is coupled to the direct mapping of nudease accessible sites. Application to the 5′nal domain of eukaryotic 28S rRNA

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Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension

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Verification of 50- to 100-mer DNA and RNA sequences with high-resolution mass spectrometry

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Interpretation of oligonucleotide mass spectra for determination of sequence using electrospray ionization and tandem mass spectrometry.

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Mass spectrometry of nucleic acids

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Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: a powerful tool for the mass and sequence analysis of natural and modified oligonucleotides

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Sequencing oligonucleotides by exonuclease digestion and delayed extraction matrix-assisted laser desorption ionization time-of-flight mass spectrometry

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Indirect mass spectrometric methods for characterizing and sequencing oligonucleotides

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Structures of posttranscriptionally modified nucleosides from RNA

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A liquid chromatography/electrospray mass spectrometric study on the post-transcriptional modification of tRNA.

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Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales

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Mapping posttranscriptional modifications in 5S ribosomal RNA by MALDI mass spectrometry

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Recognition of nucleotide G745 in 23 S ribosomal RNA by the rrmA methyltransferase

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Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches

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Identification of the mass-silent post-transcriptionally modified nucleoside pseudouridine in RNA by matrix-assisted laser desorption/ionization mass spectrometry

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7 January 2021

Fourier transform ion cyclotron resonance spectroscopy

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Fourier transform ion cyclotron resonance mass spectrometry: a primer

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Enzymatic and chemical probing of ribosomal RNA-protein interactions.

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NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition

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NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform

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Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element

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Three-dimensional folding of an RNA hairpin required for packaging HIV-1

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The major HIV-1 packaging signal is an extended bulged stem loop whose structure is altered on interaction with the Gag polyprotein

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7 January 2021

Structure of SL4 RNA from the HIV-1 packaging signal

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Stem-loop SL4 of the HIV-1 Ψ RNA packaging signal exhibits weak affinity for the nucleocapsid protein. structural studies and implications for genome recognition

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Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

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The reaction of mono- and di-functional alkylating agents with nucleic acids

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FURTHER STUDIES ON THE ALKYLATION OF NUCLEIC ACIDS AND THEIR CONSTITUENT NUCLEOTIDES

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The Reversible Chemical Modification of Uracil, Thymine, and Guanine Nucleotides and the Modification of the Action of Ribonuclease on Ribonucleic Acid*

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Matrix-assisted laser desorption/ionization mass spectrometry (MALDI) of endonuclease digests of RNA.

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Identification of a sequence required for efficient packaging of human immunodeficiency virus type 1 RNA into virions

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Polynucleotide-protein cross-links induced by ultraviolet light and their use for structural investigation of nucleoproteins

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RNA secondary structure and binding sites for gag gene products in the 5' packaging signal of human immunodeficiency virus type 1.

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based on heuristic

inferred from DOI database lookup

Identifiers

10.1016/S0022-2836(03)00589-8

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

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