(Q34229543)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

title

Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines (English)

1 reference

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28 January 2020

14

1 reference

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28 January 2020

Benjamin Audit

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Chun-Long Chen

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Fabien Mongelard

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Olivier Hyrien

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

author name string

Antoine Baker

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Benoit Moindrot

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Antoine Leleu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Guillaume Guilbaud

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Aurélien Rappailles

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Cédric Vaillant

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Arach Goldar

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Yves d'Aubenton-Carafa

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Claude Thermes

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

publication date

5 April 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

28 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

page(s)

e1002443

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

28 January 2020

copyright license

start time

5 April 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome

1 reference

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6 July 2018

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Replication-associated mutational asymmetry in the human genome

6 July 2018

1 reference

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Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription

6 July 2018

1 reference

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Eukaryotic DNA replication origins: many choices for appropriate answers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Evaluating genome-scale approaches to eukaryotic DNA replication

6 July 2018

1 reference

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Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture.

6 July 2018

1 reference

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Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Cell type specificity of chromatin organization mediated by CTCF and cohesin.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Does CTCF mediate between nuclear organization and gene expression?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

A winding road to origin discovery

6 July 2018

1 reference

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Predictable dynamic program of timing of DNA replication in human cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

CTCF: master weaver of the genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Universal temporal profile of replication origin activation in eukaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Microarray analysis of DNA replication timing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Global reorganization of replication domains during embryonic stem cell differentiation

6 July 2018

1 reference

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Genome-wide studies highlight indirect links between human replication origins and gene regulation.

6 July 2018

1 reference

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F-Seq: a feature density estimator for high-throughput sequence tags

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Replication fork movement sets chromatin loop size and origin choice in mammalian cells

6 July 2018

1 reference

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A revisionist replicon model for higher eukaryotic genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Global organization of replication time zones of the mouse genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

DNA methylation landscapes: provocative insights from epigenomics

6 July 2018

1 reference

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High-resolution mapping and characterization of open chromatin across the genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Human gene organization driven by the coordination of replication and transcription.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Replication in context: dynamic regulation of DNA replication patterns in metazoans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Replication fork velocities at adjacent replication origins are coordinately modified during DNA replication in human cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Replication timing of human chromosome 6.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Epigenomic replication: linking epigenetics to DNA replication

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

The UCSC Genome Browser Database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

DNA replication in eukaryotic cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Determinants of CpG islands: expression in early embryo and isochore structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Initiation of eukaryotic DNA replication: conservative or liberal?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

CpG islands as genomic footprints of promoters that are associated with replication origins.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

A relationship between replicon size and supercoiled loop domains in the eukaryotic genome.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Separation of B. subtilis DNA into complementary strands. 3. Direct analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Base compositional structure of genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3320577

Transcription-associated mutational asymmetry in mammalian evolution

6 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002443

Transcription-coupled TA and GC strand asymmetries in the human genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002443

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002443

Mathematical modelling of whole chromosome replication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002443

Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002443

Properties of a general model of DNA evolution under no-strand-bias conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002443

Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002443

DNA replication origins: from sequence specificity to epigenetics

21 January 2018

1 reference

12 December 2020

Structure and function of nucleic acids as cell constituents

1 reference

12 December 2020

From DNA sequence analysis to modeling replication in the human genome

1 reference

12 December 2020

Bifractality of human DNA strand-asymmetry profiles results from transcription

1 reference

12 December 2020

DNA replication timing data corroborate in silico human replication origin predictions

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1002443

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/BakerACMLGRVGMDHTA12

28 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

PubMed publication ID

22496629

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22496629%20AND%20SRC:MED&resulttype=core&format=json