(Q34249659)

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A competitive formation of DNA:RNA hybrid G-quadruplex is responsible to the mitochondrial transcription termination at the DNA replication priming site

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13 March 2020

A competitive formation of DNA:RNA hybrid G-quadruplex is responsible to the mitochondrial transcription termination at the DNA replication priming site (English)

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13 March 2020

2

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13 March 2020

author name string

Ke-wei Zheng

1

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13 March 2020

Yi-de He

3

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13 March 2020

Shan Xiao

4

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13 March 2020

Jia-yu Zhang

5

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13 March 2020

Jia-quan Liu

6

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13 March 2020

Yu-hua Hao

7

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13 March 2020

Zheng Tan

8

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13 March 2020

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publication date

19 August 2014

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13 March 2020

Nucleic Acids Research

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13 March 2020

42

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13 March 2020

10832-10844

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13 March 2020

16

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13 March 2020

copyright license

Creative Commons Attribution-NonCommercial 4.0 International

3 May 2017

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4176368/fullTextXML

based on heuristic

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Mechanism and manipulation of DNA:RNA hybrid G-quadruplex formation in transcription of G-rich DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Effect of loops and G-quartets on the stability of RNA G-quadruplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Co-transcriptional formation of DNA:RNA hybrid G-quadruplex and potential function as constitutional cis element for transcription control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Bulges in G-quadruplexes: broadening the definition of G-quadruplex-forming sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Oligonucleotide models of telomeric DNA and RNA form a Hybrid G-quadruplex structure as a potential component of telomeres

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Specific binding of anionic porphyrin and phthalocyanine to the G-quadruplex with a variety of in vitro and in vivo applications.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Toward a digital gene response: RNA G-quadruplexes with fewer quartets fold with higher cooperativity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

RNA crosslinking methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

G-quadruplex structures in RNA stimulate mitochondrial transcription termination and primer formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Biochemical techniques for the characterization of G-quadruplex structures: EMSA, DMS footprinting, and DNA polymerase stop assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Molecular crowding creates an essential environment for the formation of stable G-quadruplexes in long double-stranded DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and control of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Fluorescence-based melting assays for studying quadruplex ligands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

An exonuclease I hydrolysis assay for evaluating G-quadruplex stabilization by small molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Quaternary ammonium zinc phthalocyanine: inhibiting telomerase by stabilizing G quadruplexes and inducing G-quadruplex structure transition and formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Quadruplex DNA: sequence, topology and structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Thermodynamic and kinetic characterization of the dissociation and assembly of quadruplex nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Initiation of mitochondrial DNA replication by transcription and R-loop processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Identification of a minimal binding element within the T7 RNA polymerase promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Structure and function of the bacteriophage T7 RNA polymerase (or, the virtues of simplicity)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

A persistent RNA-DNA hybrid is formed during transcription at a phylogenetically conserved mitochondrial DNA sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

A new method for sequencing DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

6 July 2018

Dissecting the strand folding orientation and formation of G-quadruplexes in single- and double-stranded nucleic acids by ligand-induced photocleavage footprinting.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

28 October 2018

Anionic phthalocyanines targeting G-quadruplexes and inhibiting telomerase activity in the presence of excessive DNA duplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

28 October 2018

Synthesis and evaluation of cationic phthalocyanine derivatives as potential inhibitors of telomerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

28 October 2018

RNase mitochondrial RNA processing correctly cleaves a novel R loop at the mitochondrial DNA leading-strand origin of replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

28 October 2018

Circular Dichroism of Quadruplex Structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

28 October 2018

Phthalocyanines: a new class of G-quadruplex-ligands with many potential applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176368

28 October 2018

Evidence against a mitochondrial location of the 7-2/MRP RNA in mammalian cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/25140009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of DNA secondary structure on human telomerase activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/25140009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

R-Loop in the replication origin of human mitochondrial DNA is resolved by RecG, a Holliday junction-specific helicase

1 reference

https://pubmed.ncbi.nlm.nih.gov/25140009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conserved sequence box II directs transcription termination and primer formation in mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/25140009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of length variations at nucleotide positions 303-315 in human mitochondrial DNA on transcription termination

1 reference

https://pubmed.ncbi.nlm.nih.gov/25140009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

G-quadruplex hinders translocation of BLM helicase on DNA: a real-time fluorescence spectroscopic unwinding study and comparison with duplex substrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/25140009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription arrest by a G quadruplex forming-trinucleotide repeat sequence from the human c-myb gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/25140009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKU764

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25140009%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25140009%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25140009%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

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