(Q34303457)

1 August 2017

title

Horizontal gene transfer and the evolution of microvirid coliphage genomes (English)

1 reference

1 August 2017

main subject

horizontal gene transfer

0 references

author name string

D R Rokyta

1

1 reference

1 August 2017

C L Burch

2

1 reference

1 August 2017

S B Caudle

3

1 reference

1 August 2017

H A Wichman

4

1 reference

1 August 2017

language of work or name

English

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publication date

1 February 2006

1 reference

1 August 2017

published in

Journal of Bacteriology

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1 August 2017

volume

188

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1 August 2017

issue

3

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1 August 2017

page(s)

1134-1142

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Recovering evolutionary trees under a more realistic model of sequence evolution

1 August 2017

cites work

1 reference

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6 July 2018

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6 July 2018

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Origins of highly mosaic mycobacteriophage genomes

6 July 2018

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The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria

6 July 2018

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Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches

6 July 2018

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6 July 2018

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The Phage Proteomic Tree: a genome-based taxonomy for phage

6 July 2018

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Likelihood-based tests of topologies in phylogenetics

6 July 2018

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Microviridae, a family divided: isolation, characterization, and genome sequence of phiMH2K, a bacteriophage of the obligate intracellular parasitic bacterium Bdellovibrio bacteriovorus

6 July 2018

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Profiles of adaptation in two similar viruses

6 July 2018

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6 July 2018

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6 July 2018

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Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages

6 July 2018

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Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages

6 July 2018

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Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages

6 July 2018

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Molecular characterization of a bacteriophage (Chp2) from Chlamydia psittaci

6 July 2018

1 reference

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Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

6 July 2018

1 reference

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Evolutionary reversals during viral adaptation to alternating hosts

6 July 2018

1 reference

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Adapt globally, act locally: the effect of selective sweeps on bacterial sequence diversity

6 July 2018

1 reference

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Different trajectories of parallel evolution during viral adaptation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

The role of scaffolding proteins in the assembly of the small, single-stranded DNA virus phiX174

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Exceptional convergent evolution in a virus.

6 July 2018

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Structure of a viral procapsid with molecular scaffolding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Host and phi X 174 mutations affecting the morphogenesis or stabilization of the 50S complex, a single-stranded DNA synthesizing intermediate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Initiation and termination of the bacteriophage øX174 rolling circle DNA replicationin vivo: packaging of plasmid single–stranded DNA into bacteriophage øX174 coats

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Construction of bacteriophage luminal diameterX174 mutants with maximum genome sizes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Phylogenetic analysis: concepts and methods

6 July 2018

1 reference

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Spiroplasma virus 4: nucleotide sequence of the viral DNA, regulatory signals, and proposed genome organization

6 July 2018

1 reference

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Analysis of the complete nucleotide sequence of Chp1, a phage which infects avian Chlamydia psittaci

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Recombination in Escherichia coli and the definition of biological species

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Nucleotide sequence of the genome of the bacteriophage alpha 3: interrelationship of the genome structure and the gene products with those of the phages, phi X174, G4 and phi K.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Atomic structure of single-stranded DNA bacteriophage phi X174 and its functional implications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Bacterial rep- mutations that block development of small DNA bacteriophages late in infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Molecular genetics of bacteriophage P22

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Testing nested phylogenetic and phylogeographic hypotheses in the Plethodon vandykei species group.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Performance-based selection of likelihood models for phylogeny estimation

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Big-benefit mutations in a bacteriophage inhibited with heat

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

A theory of modular evolution for bacteriophages

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Genomic sequence and analysis of the atypical temperate bacteriophage N15 1 1Edited by M. Gottesman

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347346

Evolution of phi-chi 174. Isolation of four new phi-chi-like phages and comparison with phi-chi 174

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16428417

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Infection of Escherichia coli K-12 by bacteriophage φX-174

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16428417

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of the single-stranded DNA bacteriophage phi X174, refined at a resolution of 3.0 A

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16428417

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JB.188.3.1134-1142.2006

1 reference

1 August 2017

1 reference

1 August 2017

1 reference