(Q34308050)

1 August 2017

title

How do alignment programs perform on sequencing data with varying qualities and from repetitive regions? (English)

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1 August 2017

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Xiaoqing Yu

1

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1 August 2017

Kishore Guda

2

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1 August 2017

Joseph Willis

3

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1 August 2017

Martina Veigl

4

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1 August 2017

Zhenghe Wang

5

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1 August 2017

Sanford Markowitz

6

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1 August 2017

Mark D Adams

7

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1 August 2017

Shuying Sun

8

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1 August 2017

publication date

18 June 2012

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1 August 2017

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1 August 2017

volume

5

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1 August 2017

issue

1

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1 August 2017

page(s)

6

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https://scigraph.springernature.com/pub.10.1186/1756-0381-5-6

1 August 2017

exact match

0 references

cites work

Comparative analysis of algorithms for next-generation sequencing read alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

mrsFAST: a cache-oblivious algorithm for short-read mapping.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

A survey of sequence alignment algorithms for next-generation sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

Fast and accurate long-read alignment with Burrows-Wheeler transform

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

BRAT: bisulfite-treated reads analysis tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

Personalized copy number and segmental duplication maps using next-generation sequencing.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

RazerS--fast read mapping with sensitivity control

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

SOAP2: an improved ultrafast tool for short read alignment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

SHRiMP: accurate mapping of short color-space reads

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

Fast and accurate short read alignment with Burrows-Wheeler transform

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

CloudBurst: highly sensitive read mapping with MapReduce

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

Mapping short DNA sequencing reads and calling variants using mapping quality scores

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

SeqMap: mapping massive amount of oligonucleotides to the genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

ZOOM! Zillions of oligos mapped

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

SOAP: short oligonucleotide alignment program

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

PatternHunter: faster and more sensitive homology search

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

SSAHA: a fast search method for large DNA databases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

A general method applicable to the search for similarities in the amino acid sequence of two proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

Basic local alignment search tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414812

Compressed indexing and local alignment of DNA.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1756-0381-5-6

Optimal spliced alignments of short sequence reads

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1756-0381-5-6

21 January 2018

Identifiers

DOI

10.1186/1756-0381-5-6

1 reference

journals/biodatamining/YuGWVWMAS12

1 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1016117161

0 references

Fatcat ID

release_ncyjc2u7szdlfh3gmufw6xutha

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ncyjc2u7szdlfh3gmufw6xutha

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3414812

1 reference

1 August 2017

1 reference