(Q34310461)

English

Using disulfide bond engineering to study conformational changes in the beta'260-309 coiled-coil region of Escherichia coli RNA polymerase during sigma(70) binding.

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

Using disulfide bond engineering to study conformational changes in the beta'260-309 coiled-coil region of Escherichia coli RNA polymerase during sigma(70) binding (English)

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

Escherichia coli

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Alan A Dombkowski

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

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Larry C Anthony

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

Richard R Burgess

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

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1 May 2002

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10 December 2019

Journal of Bacteriology

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10 December 2019

184

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

10

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

2634-2641

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

How sigma docks to RNA polymerase and what sigma does

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Protein aggregation mediated by cysteine oxidation during the stacking phase of discontinuous buffer SDS-PAGE.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Disulfide recognition in an optimized threading potential.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

A structural model of transcription elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Structural organization of the RNA polymerase-promoter open complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Structures of two repeats of spectrin suggest models of flexibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

The functional and regulatory roles of sigma factors in transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

A surface of Escherichia coli sigma 70 required for promoter function and antitermination by phage lambda Q protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Conformational changes necessary for gene regulation by Tet repressor assayed by reversible disulfide bond formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Equilibrium and kinetic parameters of the sequence-specific interaction of Escherichia coli RNA polymerase with nontemplate strand oligodeoxyribonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Conformation and DNA binding properties of a single-stranded DNA binding region of sigma 70 subunit from Escherichia coli RNA polymerase are modulated by an interaction with the core enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

sigma factor mutations affecting the sequence-selective interaction of RNA polymerase with -10 region single-stranded DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Epitope mapping using histidine-tagged protein fragments: application to Escherichia coli RNA polymerase sigma 70.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Pathways for conformational change in seryl-tRNA synthetase from Thermus thermophilus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Prediction of protein secondary structure at better than 70% accuracy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Disulphide bridges in globular proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

The nudeotide sequence of the cloned rpoD gene for the RNA polymerase sigma subunit from E. coil K12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the λPR promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Factor Stimulating Transcription by RNA Polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Temperature dependence of the rate constants of the Escherichia coli RNA polymerase-lambda PR promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Structure and function of bacterial sigma factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Isolation and characterization of a polyol-responsive monoclonal antibody useful for gentle purification of Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

6 July 2018

Binding of the initiation factor sigma(70) to core RNA polymerase is a multistep process

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

28 October 2018

A coiled-coil from the RNA polymerase beta' subunit allosterically induces selective nontemplate strand binding by sigma(70).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

28 October 2018

Mutational analysis of beta '260-309, a sigma 70 binding site located on Escherichia coli core RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

28 October 2018

Engineering out motion: introduction of a de novo disulfide bond and a salt bridge designed to close a dynamic cleft on the surface of cytochrome b5.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

28 October 2018

DNA binding exerted by a bacterial gene regulator with an extensive coiled-coil domain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

28 October 2018

Intermediate filament-like network formed in vitro by a bacterial coiled coil protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135008

28 October 2018

Recombinant small subunit of smooth muscle myosin light chain phosphatase. Molecular properties and interactions with the targeting subunit

1 reference

https://pubmed.ncbi.nlm.nih.gov/11976292

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cyclic Re-use of the RNA Polymerase Sigma Factor

1 reference

https://pubmed.ncbi.nlm.nih.gov/11976292

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural stability and domain organization of colicin E1

1 reference

https://pubmed.ncbi.nlm.nih.gov/11976292

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping protein-protein interaction domains using ordered fragment ladder far-western analysis of hexahistidine-tagged fusion proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/11976292

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the Escherichia coli transcription factor sigma 70: localization of a region involved in the interaction with core RNA polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/11976292

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Amino acid neighbours and detailed conformational analysis of cysteines in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/11976292

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit

1 reference

https://pubmed.ncbi.nlm.nih.gov/11976292

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Core RNA polymerase from E. coli induces a major change in the domain arrangement of the sigma 70 subunit

1 reference

https://pubmed.ncbi.nlm.nih.gov/11976292

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JB.184.10.2634-2641.2002

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11976292%20AND%20SRC:MED&resulttype=core&format=json

10 December 2019

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