(Q34317343)

1 August 2017

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title

mRNA decay in Escherichia coli comes of age. (English)

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1 August 2017

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Sidney R Kushner

1

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1 August 2017

language of work or name

English

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publication date

1 September 2002

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1 August 2017

published in

Journal of Bacteriology

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1 August 2017

volume

184

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1 August 2017

issue

17

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1 August 2017

page(s)

4658-65; discussion 4657

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SOME OBSERVATIONS ON THE "LATENT" RIBONUCLEASE OF ESCHERICHIA COLI

1 August 2017

cites work

1 reference

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Unstable ribonucleic acid revealed by pulse labelling of Escherichia coli

6 July 2018

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Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli

6 July 2018

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RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors

6 July 2018

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Escherichia coli RNase M is a multiply altered form of RNase I

6 July 2018

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PNPase autocontrols its expression by degrading a double-stranded structure in the pnp mRNA leader

6 July 2018

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Cleavage of poly(A) tails on the 3'-end of RNA by ribonuclease E of Escherichia coli

6 July 2018

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Preferential cleavage of degradative intermediates of rpsT mRNA by the Escherichia coli RNA degradosome

6 July 2018

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RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease E.

6 July 2018

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Exoribonucleases and their multiple roles in RNA metabolism

6 July 2018

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Polynucleotide phosphorylase functions both as a 3' right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli

6 July 2018

1 reference

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An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression

6 July 2018

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Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis

6 July 2018

1 reference

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Action of RNase II and polynucleotide phosphorylase against RNAs containing stem-loops of defined structure

6 July 2018

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The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity.

6 July 2018

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mRNA degradation in bacteria

6 July 2018

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RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.

6 July 2018

1 reference

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Oligoribonuclease is an essential component of the mRNA decay pathway

6 July 2018

1 reference

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Ribonuclease E is a 5'-end-dependent endonuclease

6 July 2018

1 reference

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The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly

6 July 2018

1 reference

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Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome

6 July 2018

1 reference

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RNase E: still a wonderfully mysterious enzyme.

6 July 2018

1 reference

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Development of an in vitro mRNA decay system for Escherichia coli: poly(A) polymerase I is necessary to trigger degradation

6 July 2018

1 reference

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Multiple degradation pathways of the rpsO mRNA of Escherichia coli. RNase E interacts with the 5' and 3' extremities of the primary transcript.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Identification of the coding region for a second poly(A) polymerase in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Proteins associated with RNase E in a multicomponent ribonucleolytic complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Promiscuous exoribonucleases of Escherichia coli

6 July 2018

1 reference

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Cytoplasmic axial filaments in Escherichia coli cells: possible function in the mechanism of chromosome segregation and cell division

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

A protein complex mediating mRNA degradation in Escherichia coli.

6 July 2018

1 reference

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Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

The Escherichia coli pcnB gene promotes adenylylation of antisense RNAI of ColE1-type plasmids in vivo and degradation of RNAI decay intermediates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Evidence for an RNA binding region in the Escherichia coli processing endoribonuclease RNase E.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Polyadenylylation helps regulate mRNA decay in Escherichia coli.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Polynucleotide phosphorylase of Escherichia coli induces the degradation of its RNase III processed messenger by preventing its translation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

The processive degradation of individual polyribonucleotide chains. I. Escherichia coli ribonuclease II

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

T7 Early RNAs and Escherichia coli Ribosomal RNAs are Cut from Large Precursor RNAs In Vivo by Ribonuclease III

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Purification and Properties of a Ribonucleic Acid Primer-independent Polyriboadenylate Polymerase from Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Degradation of RNA in Escherichia coli. A hypothesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5' end.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Processing of unstable bacteriophage T4 gene 32 mRNAs into a stable species requires Escherichia coli ribonuclease E.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Autoregulation of RNase III operon by mRNA processing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Genetics and sequence analysis of the pcnB locus, an Escherichia coli gene involved in plasmid copy number control

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Escherichia coli RNase E has a role in the decay of bacteriophage T4 mRNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Escherichia coli rna gene encoding RNase I: cloning, overexpression, subcellular distribution of the enzyme, and use of an rna deletion to identify additional RNases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the product of the ams gene in vivo and in vitro

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

RNase I*, a form of RNase I, and mRNA degradation in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli

6 July 2018

1 reference

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Genetic studies of cleavage-initiated mRNA decay and processing of ribosomal 9S RNA show that the Escherichia coli ams and rne loci are the same

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

The rate of processing and degradation of antisense RNAI regulates the replication of ColE1-type plasmids in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis

6 July 2018

1 reference

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Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence for its generation in vivo by transcription termination and by RNase III and RNase E-dependent processing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Cloning and analysis of the entire Escherichia coli ams gene. ams is identical to hmp1 and encodes a 114 kDa protein that migrates as a 180 kDa protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Identification of the gene for an Escherichia coli poly(A) polymerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Translation and mRNA decay

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Isolation and characterization of polyadenylate-containing RNA from Bacillus brevis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Models for decay of Escherichia coli lac messenger RNA and evidence for inactivating cleavages between its messages

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

An unstable intermediate carrying information from genes to ribosomes for protein synthesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Decay rates of different mRNA in E. coli and models of decay.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

RNase II levels change according to the growth conditions: characterization of gmr, a new Escherichia coli gene involved in the modulation of RNase II.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R.

28 October 2018

1 reference

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Poly(A)- and poly(U)-specific RNA 3' tail shortening by E. coli ribonuclease E.

28 October 2018

1 reference

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Functional relationship between Escherichia coli RNase E and the CafA protein.

28 October 2018

1 reference

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PNPase modulates RNase II expression in Escherichia coli: implications for mRNA decay and cell metabolism

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Maturation pathways for E. coli tRNA precursors: a random multienzyme process in vivo.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Differential sensitivities of portions of the mRNA for ribosomal protein S20 to 3'-exonucleases dependent on oligoadenylation and RNA secondary structure.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Cloning and analysis of the entire Escherichia coli ams gene. ams is identical to hmp1 and encodes a 114 kDa protein that migrates as a 180 kDa protein

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

The 5' ends of RNA oligonucleotides in Escherichia coli and mRNA degradation.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Purification and characterization of ribonuclease M and mRNA degradation in Escherichia coli.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135271

Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5' end of 16S rRNA

28 October 2018

1 reference

12 December 2020

Evidence for random endonucleolytic cleavages between messages in decay of Escherichia coli trp mRNA

1 reference

12 December 2020

Escherichia coli endoribonuclease RNase E: autoregulation of expression and site-specific cleavage of mRNA

1 reference

12 December 2020

Polyadenylation of Escherichia coli transcripts plays an integral role in regulating intracellular levels of polynucleotide phosphorylase and RNase E

1 reference

12 December 2020

Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly

1 reference

12 December 2020

A 5'-terminal stem-loop structure can stabilize mRNA in Escherichia coli

1 reference

12 December 2020

RNase E, an endoribonuclease, has a general role in the chemical decay of Escherichia coli mRNA: evidence that rne and ams are the same genetic locus

1 reference

12 December 2020

Degradation of mRNA in Escherichia coli: an old problem with some new twists

1 reference

12 December 2020

Metabolism of messenger RNA from the gal operon of Escherichia coli

1 reference

12 December 2020

The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo

1 reference

12 December 2020

The gene specifying RNase E (rne) and a gene affecting mRNA stability (ams) are the same gene

1 reference

12 December 2020

Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli

1 reference

12 December 2020

Messenger ribonucleic acid for the lipoprotein of the Escherichia coli outer membrane is polyadenylated

1 reference

12 December 2020

Autoregulation allows Escherichia coli RNase E to adjust continuously its synthesis to that of its substrates

1 reference

12 December 2020

Processing enzyme ribonuclease E specifically cleaves RNA I. An inhibitor of primer formation in plasmid DNA synthesis

1 reference

12 December 2020

A nuclease specific for double-stranded RNA

1 reference

12 December 2020

PURIFICATION AND PROPERTIES OF RIBONUCLEASE II FROM ESCHERICHIA COLI

1 reference

12 December 2020

Maturatio of 5-S rRNA: Ribonuclease E Cleavages and Their Dependence on Precursor Sequences

1 reference

12 December 2020

Stabilization of circular rpsT mRNA demonstrates the 5'-end dependence of RNase E action in vivo

1 reference

12 December 2020

Specific endonucleolytic cleavage sites for decay of Escherichia coli mRNA

1 reference

12 December 2020

Evidence for reduced breakdown of messenger RNA during blocked transcription or translation in Escherichia coli

1 reference

12 December 2020

Transfer RNA precursors are accumulated in Escherichia coli in the absence of RNase E

1 reference

12 December 2020

RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters

1 reference

12 December 2020

Residual polyadenylation in poly(A) polymerase I (pcnB ) mutants of Escherichia coli does not result from the activity encoded by the f310 gene

1 reference

12 December 2020

Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism

1 reference

12 December 2020

Evidence for endonucleolytic attack in decay of lac messenger RNA in Escherichia coli

1 reference

12 December 2020

Incorporation of water oxygens into intracellular nucleotides and RNA. II. Predominantly hydrolytic RNA turnover in Escherichia coli

1 reference

12 December 2020

RNase E, the major player in mRNA degradation, is down-regulated in Escherichia coli during a transient growth retardation (diauxic lag)

1 reference

12 December 2020

10.1128/JB.184.17.4658-4665.2002

Identifiers

DOI

1 reference

release_ptrms64snvdebatjlfax5iht4q

1 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ptrms64snvdebatjlfax5iht4q

24 November 2022

mapped directly with Wikidata item

PMC publication ID

135271

1 reference

1 August 2017

1 reference