(Q34343497)

1 August 2017

title

Detecting cancer outlier genes with potential rearrangement using gene expression data and biological networks (English)

1 reference

1 August 2017

Mohammed Alshalalfa

1

1 reference

1 August 2017

Tarek A Bismar

series ordinal

2

1 reference

1 August 2017

Reda Alhajj

series ordinal

3

1 reference

1 August 2017

publication date

28 June 2012

1 reference

Advances in bioinformatics

1 August 2017

published in

1 reference

1 August 2017

volume

2012

1 reference

1 August 2017

page(s)

373506

1 reference

Creative Commons Attribution 3.0 Unported

1 August 2017

copyright license

start time

28 June 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

cites work

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

GTI: a novel algorithm for identifying outlier gene expression profiles from integrated microarray datasets

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

The genomic complexity of primary human prostate cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

Integrative genomic profiling of human prostate cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

A probabilistic framework for aligning paired-end RNA-seq data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

A human functional protein interaction network and its application to cancer data analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

TMPRSS2-ERG fusion is frequently observed in Gleason pattern 3 prostate cancer in a Canadian cohort

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

Recurrent gene fusions in prostate cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

The role of SPINK1 in ETS rearrangement-negative prostate cancers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

Estrogen-dependent signaling in a molecularly distinct subclass of aggressive prostate cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

Expression of cutaneous fatty acid-binding protein (C-FABP) in prostate cancer: potential prognostic marker and target for tumourigenicity-suppression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

The emerging roles of forkhead box (Fox) proteins in cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

Bioinformatics approach leads to the discovery of the TMPRSS2:ETS gene fusion in prostate cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

The T cell receptor gamma chain alternate reading frame protein (TARP), a prostate-specific protein localized in mitochondria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

MDM2--master regulator of the p53 tumor suppressor protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394389

TMPRSS2-ERG and PTEN loss in prostate cancer

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1155%2F2012%2F373506

Cancer outlier differential gene expression detection

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1155%2F2012%2F373506

A cellular oncogene is translocated to the Philadelphia chromosome in chronic myelocytic leukaemia

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1155%2F2012%2F373506

PADGE: analysis of heterogeneous patterns of differential gene expression

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22811706

12 December 2020

inferred from PubMed ID database lookup

Gene expression correlates of clinical prostate cancer behavior

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22811706

12 December 2020

inferred from PubMed ID database lookup

Outlier sums for differential gene expression analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22811706

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1155/2012/373506

1 reference

journals/abi/Al-ShalalfaBA12

1 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_nazjcayai5dqvhcoth4uen5pg4

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/nazjcayai5dqvhcoth4uen5pg4

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3394389

1 reference

1 August 2017

1 reference