(Q34366569)

1 August 2017

title

Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA (English)

1 reference

1 August 2017

Minako Sumita

1

1 reference

1 August 2017

Jean-Paul Desaulniers

2

1 reference

1 August 2017

Yu-Cheng Chang

3

1 reference

1 August 2017

Helen M-P Chui

4

1 reference

1 August 2017

Lawrence Clos

5

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1 August 2017

Christine S Chow

6

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1 August 2017

language of work or name

English

0 references

publication date

1 September 2005

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1 August 2017

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1 August 2017

volume

11

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1 August 2017

issue

9

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1 August 2017

page(s)

1420-1429

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Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications

1 August 2017

cites work

1 reference

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6 July 2018

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A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast.

6 July 2018

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Study of the structural dynamics of the E coli 70S ribosome using real-space refinement

6 July 2018

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Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression

6 July 2018

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Investigation of Overhauser effects between pseudouridine and water protons in RNA helices

6 July 2018

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The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

6 July 2018

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High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

6 July 2018

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Structure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions

6 July 2018

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Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria

6 July 2018

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A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture

6 July 2018

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Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions

6 July 2018

1 reference

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Crystal structure of the ribosome at 5.5 A resolution

6 July 2018

1 reference

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Isolation and properties of Escherichia coli 23S-RNA pseudouridine 1911, 1915, 1917 synthase (RluD).

6 July 2018

1 reference

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Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

6 July 2018

1 reference

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Structure of the 30S ribosomal subunit

6 July 2018

1 reference

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The structural basis of ribosome activity in peptide bond synthesis

6 July 2018

1 reference

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

A ratchet-like inter-subunit reorganization of the ribosome during translocation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Pseudouridine in RNA: what, where, how, and why

6 July 2018

1 reference

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Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Solution structure of the E. coli 70S ribosome at 11.5 A resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

X-ray crystal structures of 70S ribosome functional complexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

The RNA modification database--1998.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Mapping the inside of the ribosome with an RNA helical ruler

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

The pseudouridine residues of ribosomal RNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Structural characterization of U*-1915 in domain IV from Escherichia coli 23S ribosomal RNA as 3-methylpseudouridine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Stabilization of RNA stacking by pseudouridine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Synthesis and NMR of RNA with selective isotopic enrichment in the bases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Summary: the modified nucleosides of RNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Chemical probes for higher-order structure in RNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Some optical properties of diadenosine-5'-phosphates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Pseudouridine distribution in mammalian 18 S ribosomal RNA. A major cluster in the central region of the molecule

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Properties of a U1/mRNA 5' splice site duplex containing pseudouridine as measured by thermodynamic and NMR methods.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Properties of pseudouridine N1 imino protons located in the major groove of an A-form RNA duplex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Definition of bases in 23S rRNA essential for ribosomal subunit association

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Synthesis of helix 69 of Escherichia coli 23S rRNA containing its natural modified nucleosides, m(3)Psi and Psi.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Determinants of RNA hairpin loop-loop complex stability.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

G.U base pairing motifs in ribosomal RNA.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Changing the identity of a tRNA by introducing a G-U wobble pair near the 3' acceptor end.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370825

Synthesis and conformational properties of diribonucleoside monophosphates containing modified nucleosides as found in transfer RNA

27 October 2018

1 reference

12 December 2020

A simple structural feature is a major determinant of the identity of a transfer RNA

1 reference

12 December 2020

Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure

1 reference

12 December 2020

Nucleotides in 23S rRNA protected by the association of 30S and 50S ribosomal subunits

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.2320605

1 reference

1 August 2017

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1 August 2017

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