(Q34376707)

1 August 2017

title

Novel domains and orthologues of eukaryotic transcription elongation factors. (English)

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1 August 2017

1

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1 August 2017

language of work or name

English

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publication date

1 September 2002

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1 August 2017

published in

Nucleic Acids Research

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1 August 2017

volume

30

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1 August 2017

issue

17

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1 August 2017

page(s)

3643-3652

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Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo

1 August 2017

cites work

1 reference

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The Paf1 complex physically and functionally associates with transcription elongation factors in vivo

6 July 2018

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Comparative genomics and evolution of proteins involved in RNA metabolism

6 July 2018

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Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects

6 July 2018

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A second catalytic domain in the Elp3 histone acetyltransferases: a candidate for histone demethylase activity?

6 July 2018

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Chromatin elongation factors

6 July 2018

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Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex

6 July 2018

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A Rad26-Def1 complex coordinates repair and RNA pol II proteolysis in response to DNA damage

6 July 2018

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Systematic identification of novel protein domain families associated with nuclear functions

6 July 2018

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6 July 2018

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6 July 2018

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Recent improvements to the SMART domain-based sequence annotation resource

6 July 2018

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ACRC codes for a novel nuclear protein with unusual acidic repeat tract and maps to DYT3 (dystonia parkinsonism) critical interval in xq13.1.

6 July 2018

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Characterization of a six-subunit holo-elongator complex required for the regulated expression of a group of genes in Saccharomyces cerevisiae

6 July 2018

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Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

6 July 2018

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RNA polymerase II elongator holoenzyme is composed of two discrete subcomplexes

6 July 2018

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Interaction of FACT, SSRP1, and the high mobility group (HMG) domain of SSRP1 with DNA damaged by the anticancer drug cisplatin

6 July 2018

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The COG database: new developments in phylogenetic classification of proteins from complete genomes

6 July 2018

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Spt5 and spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster

6 July 2018

1 reference

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RNA polymerase II elongation through chromatin

6 July 2018

1 reference

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Proteins of the endoplasmic-reticulum-associated degradation pathway: domain detection and function prediction

6 July 2018

1 reference

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SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

6 July 2018

1 reference

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Detecting protein function and protein-protein interactions from genome sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

The use of gene clusters to infer functional coupling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Structure and function of the human transcription elongation factor DSIF

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Profile hidden Markov models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

The yeast protein complex containing cdc68 and pob3 mediates core-promoter repression through the cdc68 N-terminal domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Role of Cue1p in ubiquitination and degradation at the ER surface

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Clone 10d/BM28 (CDCL1), an early S-phase protein, is an important growth regulator of melanoma.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Archaeal chromatin: virtual or real?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

A new gene locus of Bordetella pertussis defines a novel family of prokaryotic transcriptional accessory proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Applying motif and profile searches

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Evidence that Spt6p controls chromatin structure by a direct interaction with histones

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Prediction of protein secondary structure at better than 70% accuracy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

A fission yeast gene encoding a protein that preferentially associates with curved DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Identification and expression of the cDNA of KIN17, a zinc-finger gene located on mouse chromosome 2, encoding a new DNA-binding protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

The mouse Enhancer trap locus 1 (Etl-1): a novel mammalian gene related to Drosophila and yeast transcriptional regulator genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

GreA protein: a transcription elongation factor from Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Removing near-neighbour redundancy from large protein sequence collections

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

RfaH and the ops element, components of a novel system controlling bacterial transcription elongation

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137420

Approximate statistics of gapped alignments

27 October 2018

1 reference

PubMed

12 December 2020

1 reference

12 December 2020

1 reference

PubMed

12 December 2020

CHROMA: consensus-based colouring of multiple alignments for publication

1 reference

PubMed

12 December 2020

Identifiers

DOI

10.1093/NAR/GKF498

1 reference

1 August 2017

1 reference

1 August 2017

1 reference