(Q34378999)

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Conformational energetics of stable and metastable states formed by DNA triplet repeat oligonucleotides: implications for triplet expansion diseases

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14 December 2019

Conformational energetics of stable and metastable states formed by DNA triplet repeat oligonucleotides: implications for triplet expansion diseases (English)

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14 December 2019

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14 December 2019

author name string

N Makube

2

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14 December 2019

G E Plum

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14 December 2019

H H Klump

4

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14 December 2019

K J Breslauer

5

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14 December 2019

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4 November 2002

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14 December 2019

Proceedings of the National Academy of Sciences of the United States of America

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14 December 2019

99

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14 December 2019

23

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14 December 2019

14700-14705

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14 December 2019

A new peculiar DNA structure: NMR solution structure of a DNA kissing complex

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Trinucleotide repeats: mechanisms and pathophysiology

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A semiflexible polymer model applied to loop formation in DNA hairpins

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6 July 2018

Configurational diffusion down a folding funnel describes the dynamics of DNA hairpins

1 reference

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A retroviral RNA kissing complex containing only two G⋅C base pairs

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6 July 2018

Base stacking and even/odd behavior of hairpin loops in DNA triplet repeat slippage and expansion with DNA polymerase

1 reference

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6 July 2018

Heat capacity effects on the melting of DNA. 2. Analysis of nearest-neighbor base pair effects

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6 July 2018

Heat capacity effects on the melting of DNA. 1. General aspects.

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6 July 2018

Triplet repeat disorders: discussion of molecular mechanisms

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6 July 2018

Interlocked mismatch-aligned arrowhead DNA motifs

1 reference

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6 July 2018

A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques

1 reference

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6 July 2018

A quantitative method for evaluating the stabilities of nucleic acids

1 reference

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6 July 2018

DNA secondary structure: a common and causative factor for expansion in human disease

1 reference

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6 July 2018

Triplet repeats form secondary structures that escape DNA repair in yeast

1 reference

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6 July 2018

Kinetics of conformational fluctuations in DNA hairpin-loops

1 reference

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6 July 2018

Analysis of strand slippage in DNA polymerase expansions of CAG/CTG triplet repeats associated with neurodegenerative disease

1 reference

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6 July 2018

From RNA hairpins to kisses to pseudoknots.

1 reference

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6 July 2018

Structural analysis of slipped-strand DNA (S-DNA) formed in (CTG)n. (CAG)n repeats from the myotonic dystrophy locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

Trinucleotide repeats associated with human disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

Relationship between Escherichia coli growth and deletions of CTG.CAG triplet repeats in plasmids.

1 reference

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6 July 2018

The effect of nucleic acid geometry on counterion association.

1 reference

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6 July 2018

Stability of intrastrand hairpin structures formed by the CAG/CTG class of DNA triplet repeats associated with neurological diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

Molecular basis of genetic instability of triplet repeats

1 reference

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6 July 2018

Solution structures of the individual single strands of the fragile X DNA triplets (GCC)n.(GGC)n

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

The fragile X syndrome d(CGG)n nucleotide repeats form a stable tetrahelical structure

1 reference

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6 July 2018

Apparent heat capacity change accompanying a nonspecific protein-DNA interaction. Escherichia coli SSB tetramer binding to oligodeoxyadenylates

1 reference

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6 July 2018

Hairpins are formed by the single DNA strands of the fragile X triplet repeats: structure and biological implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

Trinucleotide repeats that expand in human disease form hairpin structures in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

Hairpin properties of single-stranded DNA containing a GC-rich triplet repeat: (CTG)15.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

Expansion and deletion of CTG repeats from human disease genes are determined by the direction of replication in E. coli.

1 reference

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6 July 2018

Pausing of DNA synthesis in vitro at specific loci in CTG and CGG triplet repeats from human hereditary disease genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

Bent helix formation between RNA hairpins with complementary loops

1 reference

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6 July 2018

Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions

1 reference

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6 July 2018

DNA CTG triplet repeats involved in dynamic mutations of neurologically related gene sequences form stable duplexes

1 reference

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6 July 2018

Mismatch repair in Escherichia coli enhances instability of (CTG)n triplet repeats from human hereditary diseases

1 reference

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6 July 2018

Scanning microcalorimetry in studying temperature-induced changes in proteins.

1 reference

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6 July 2018

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

Predicting DNA duplex stability from the base sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

Influence of loop residues on the relative stabilities of DNA hairpin structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137482

6 July 2018

Non-clonability correlates with genomic instability: a case study of a unique DNA region.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Inhibitory effects of expanded GAA.TTC triplet repeats from intron I of the Friedreich ataxia gene on transcription and replication in vivo.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Cloning, characterization, and properties of seven triplet repeat DNA sequences.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

CTG triplet repeats from human hereditary diseases are dominant genetic expansion products in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Unexpected formation of parallel duplex in GAA and TTC trinucleotide repeats of Friedreich's ataxia

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Fragile X DNA triplet repeats, (GCC)n, form hairpins with single hydrogen-bonded cytosine.cytosine mispairs at the CpG sites: isotope-edited nuclear magnetic resonance spectroscopy on (GCC)n with selective 15N4-labeled cytosine bases.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Solution structures of the Huntington's disease DNA triplets, (CAG)n

1 reference

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21 January 2018

The HIV-1(Lai) RNA dimerization. Thermodynamic parameters associated with the transition from the kissing complex to the extended dimer.

1 reference

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21 January 2018

Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Trinucleotide repeat expansion and human disease

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Trinucleotide repeat DNA structures: dynamic mutations from dynamic DNA

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Hairpin formation during DNA synthesis primer realignment in vitro in triplet repeat sequences from human hereditary disease genes

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Alternative structures in duplex DNA formed within the trinucleotide repeats of the myotonic dystrophy and fragile X loci

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

The trinucleotide repeat sequence d(CGG)15 forms a heat-stable hairpin containing Gsyn. Ganti base pairs

1 reference

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21 January 2018

TTA.TAA triplet repeats in plasmids form a non-H bonded structure

1 reference

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21 January 2018

The high-resolution structure of the triplex formed by the GAA/TTC triplet repeat associated with Friedreich's ataxia

1 reference

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21 January 2018

Influence of hairpins on template reannealing at trinucleotide repeat duplexes: a model for slipped DNA

1 reference

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21 January 2018

At physiological pH, d(CCG)15 forms a hairpin containing protonated cytosines and a distorted helix

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Slipped structures in DNA triplet repeat sequences: entropic contributions to genetic instabilities

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Communication between noncontacting macromolecules

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Problems and prospects in microcalorimetry of biological macromolecules

1 reference

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21 January 2018

Importance of oligoelectrolyte end effects for the thermodynamics of conformational transitions of nucleic acid oligomers: A grand canonical Monte Carlo analysis

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.222519799

21 January 2018

Flexibility of single-stranded DNA: use of gapped duplex helices to determine the persistence lengths of poly(dT) and poly(dA)

1 reference

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21 January 2018

Sequence dependent rigidity of single stranded DNA

1 reference

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21 January 2018

Misfolded loops decrease the effective rate of DNA hairpin formation

1 reference

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21 January 2018

Identifiers

10.1073/PNAS.222519799

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12417759%20AND%20SRC:MED&resulttype=core&format=json

14 December 2019

2002PNAS...9914700V

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1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12417759%20AND%20SRC:MED&resulttype=core&format=json

14 December 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12417759%20AND%20SRC:MED&resulttype=core&format=json

14 December 2019

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