(Q34383959)

English

The glycolyzer: automated glycan annotation software for high performance mass spectrometry and its application to ovarian cancer glycan biomarker discovery.

scientific article

In more languages

default for all languages

No label defined

No description defined

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

The glycolyzer: automated glycan annotation software for high performance mass spectrometry and its application to ovarian cancer glycan biomarker discovery (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

0 references

0 references

1 reference

based on heuristic

inferred from title

0 references

Maria Lorna de Leoz

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

author name string

Scott R Kronewitter

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

John S Strum

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Lauren M Dimapasoc

5

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Andrés Guerrero

6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Suzanne Miyamoto

7

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Carlito B Lebrilla

8

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Gary S Leiserowitz

9

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

publication date

1 August 2012

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

12

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

15-16

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

2523-2538

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

A framework for evaluating biomarkers for early detection: validation of biomarker panels for ovarian cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Ovarian cancer biomarker performance in prostate, lung, colorectal, and ovarian cancer screening trial specimens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

EUROCarbDB: An open-access platform for glycoinformatics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Human serum processing and analysis methods for rapid and reproducible N-glycan mass profiling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Chip-based reversed-phase liquid chromatography-mass spectrometry of permethylated N-linked glycans: a potential methodology for cancer-biomarker discovery.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Comparison of a novel multiple marker assay vs the Risk of Malignancy Index for the prediction of epithelial ovarian cancer in patients with a pelvic mass

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Glycomic analysis of sialic acid linkages in glycans derived from blood serum glycoproteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Glycomics and disease markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Rapid and high-throughput analysis of N-glycans from ovarian cancer serum using a 96-well plate platform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

The development of retrosynthetic glycan libraries to profile and classify the human serum N-linked glycome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Software platform for high-throughput glycomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Profile of native N-linked glycan structures from human serum using high performance liquid chromatography on a microfluidic chip and time-of-flight mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Glycomic approach for potential biomarkers on prostate cancer: profiling of N-linked glycans in human sera and pRNS cell lines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Glycoproteomics for prostate cancer detection: changes in serum PSA glycosylation patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Glycoproteomic analyses of ovarian cancer cell lines and sera from ovarian cancer patients show distinct glycosylation changes in individual proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

"Glyco-peakfinder"--de novo composition analysis of glycoconjugates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Changes of serum glycans during sepsis and acute pancreatitis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Glycomics analysis of serum: a potential new biomarker for ovarian cancer?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Alterations in the serum glycome due to metastatic prostate cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Profiling of glycans in serum for the discovery of potential biomarkers for ovarian cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Congruent strategies for carbohydrate sequencing. 3. OSCAR: an algorithm for assigning oligosaccharide topology from MSn data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Congruent strategies for carbohydrate sequencing. 2. FragLib: an MSn spectral library

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Data pre-processing in liquid chromatography-mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

KEGG as a glycome informatics resource

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Automatic annotation of matrix-assisted laser desorption/ionization N-glycan spectra

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

GlycoFragment and GlycoSearchMS: web tools to support the interpretation of mass spectra of complex carbohydrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

GLYCO-FRAGMENT: A web tool to support the interpretation of mass spectra of complex carbohydrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

SWEET-DB: an attempt to create annotated data collections for carbohydrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

GlycoMod--a software tool for determining glycosylation compositions from mass spectrometric data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Proteome and glycosylation mapping identifies post-translational modifications associated with aggressive breast cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

GlycoSuiteDB: a new curated relational database of glycoprotein glycan structures and their biological sources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Dual roles of sialyl Lewis X oligosaccharides in tumor metastasis and rejection by natural killer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Inflammation-induced expression of sialyl LewisX is not restricted to alpha1-acid glycoprotein but also occurs to a lesser extent on alpha1-antichymotrypsin and haptoglobin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Inflammation-induced expression of sialyl Lewis X-containing glycan structures on alpha 1-acid glycoprotein (orosomucoid) in human sera

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

6 July 2018

Ovarian cancer is associated with changes in glycosylation in both acute-phase proteins and IgG.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100273

21 January 2018

Algorithms for automatic interpretation of high resolution mass spectra.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100273

21 January 2018

Determination of peptide and protein ion charge states by Fourier transformation of isotope-resolved mass spectra.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100273

21 January 2018

Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100273

21 January 2018

Automatic deconvolution of isotope-resolved mass spectra using variable selection and quantized peptide mass distribution.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100273

21 January 2018

A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100273

21 January 2018

A Note on the Generation of Random Normal Deviates

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100273

21 January 2018

N-glycosylation analysis using the StrOligo algorithm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567444

27 October 2018

Emerging glycomics technologies

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100273

21 January 2018

Determination of monoisotopic masses and ion populations for large biomolecules from resolved isotopic distributions

1 reference

https://pubmed.ncbi.nlm.nih.gov/22903841

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans

1 reference

https://pubmed.ncbi.nlm.nih.gov/22903841

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BOLD--a biological O-linked glycan database

1 reference

https://pubmed.ncbi.nlm.nih.gov/22903841

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Frontiers in glycomics: Bioinformatics and biomarkers in disease An NIH White Paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11–13, 2006)

1 reference

https://pubmed.ncbi.nlm.nih.gov/22903841

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ultra performance liquid chromatographic profiling of serum N-glycans for fast and efficient identification of cancer associated alterations in glycosylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/22903841

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The prospects of glycan biomarkers for the diagnosis of diseases

1 reference

https://pubmed.ncbi.nlm.nih.gov/22903841

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/PMIC.201100273

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22903841%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34383959&oldid=1644805089"