(Q34385918)

24245503

1 August 2017

title

ATP transport through VDAC and the VDAC-tubulin complex probed by equilibrium and nonequilibrium MD simulations (English)

1 reference

1 August 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24245503%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

author name string

Tatiana K Rostovtseva

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24245503%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Sergey M Bezrukov

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24245503%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

language of work or name

English

0 references

publication date

25 November 2013

1 reference

1 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24245503%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

volume

52

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24245503%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

issue

51

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24245503%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

page(s)

9246-9256

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24245503%20AND%20SRC:MED&resulttype=core&format=json

Optimization of the molecular dynamics method for simulations of DNA and ion transport through biological nanopores

7 June 2020

cites work

1 reference

12 December 2020

Tubulin-blocked state of VDAC studied by polymer and ATP partitioning

1 reference

12 December 2020

Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory.

1 reference

12 December 2020

Nucleotide-binding sites in the voltage-dependent anion channel: characterization and localization

1 reference

12 December 2020

β-Barrel mobility underlies closure of the voltage-dependent anion channel

1 reference

12 December 2020

Deciphering ionic current signatures of DNA transport through a nanopore

1 reference

12 December 2020

VDAC inhibition by tubulin and its physiological implications

1 reference

12 December 2020

Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map

1 reference

12 December 2020

An N-terminal nucleotide-binding site in VDAC1: involvement in regulating mitochondrial function

1 reference

12 December 2020

Molecular dynamics studies of ion permeation in VDAC.

1 reference

12 December 2020

Protein-protein docking with backbone flexibility.

1 reference

12 December 2020

The molecular mechanism of ion-dependent gating in secondary transporters

1 reference

12 December 2020

Evaluations of the Absolute and Relative Free Energies for Antidepressant Binding to the Amino Acid Membrane Transporter LeuT with Free Energy Simulations

1 reference

12 December 2020

The binding mode of epothilone A on alpha,beta-tubulin by electron crystallography

1 reference

12 December 2020

Optimizing transport of metabolites through large channels: molecular sieves with and without binding

1 reference

12 December 2020

Automated builder and database of protein/membrane complexes for molecular dynamics simulations

1 reference

12 December 2020

Regulation of respiration in brain mitochondria and synaptosomes: restrictions of ADP diffusion in situ, roles of tubulin, and mitochondrial creatine kinase

1 reference

12 December 2020

Binding modes of μ-conotoxin to the bacterial sodium channel (NaVAb)

1 reference

12 December 2020

Tubulin binding blocks mitochondrial voltage-dependent anion channel and regulates respiration

1 reference

12 December 2020

Rectification of the current in alpha-hemolysin pore depends on the cation type: the alkali series probed by MD simulations and experiments

1 reference

12 December 2020

A microscopic view of ion conduction through the K+ channel.

1 reference

12 December 2020

The structural pathway for water permeation through sodium-glucose cotransporters

1 reference

12 December 2020

PBEQ-Solver for online visualization of electrostatic potential of biomolecules

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12 December 2020

Revisiting free energy calculations: a theoretical connection to MM/PBSA and direct calculation of the association free energy

1 reference

12 December 2020

Scalable molecular dynamics with NAMD

1 reference

12 December 2020

Phosphorylation of voltage-dependent anion channel by serine/threonine kinases governs its interaction with tubulin

1 reference

12 December 2020

Ionic Current Rectification Through Silica Nanopores

1 reference

12 December 2020

CHARMM: the biomolecular simulation program

1 reference

12 December 2020

Voltage-dependent anion channels modulate mitochondrial metabolism in cancer cells: regulation by free tubulin and erastin

1 reference

12 December 2020

Modeling and simulation of ion channels

1 reference

12 December 2020

Cloning and recombinant expression of the La RNA-binding protein from Trypanosoma brucei

1 reference

12 December 2020

Modeling disordered regions in proteins using Rosetta

1 reference

12 December 2020

Efficient determination of protein-protein standard binding free energies from first principles

1 reference

12 December 2020

The Role of Atomic Polarization in the Thermodynamics of Chloroform Partitioning to Lipid Bilayers.

1 reference

12 December 2020

VDAC, a channel in the outer mitochondrial membrane

1 reference

12 December 2020

The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating

1 reference

12 December 2020

Benchmarking and analysis of protein docking performance in Rosetta v3.2.

1 reference

12 December 2020

ATP transport through a single mitochondrial channel, VDAC, studied by current fluctuation analysis

1 reference

12 December 2020

Membrane lipid composition regulates tubulin interaction with mitochondrial voltage-dependent anion channel

1 reference

12 December 2020

Free tubulin modulates mitochondrial membrane potential in cancer cells

1 reference

12 December 2020

Principles of conduction and hydrophobic gating in K+ channels

1 reference

12 December 2020

On the selective ion binding hypothesis for potassium channels

1 reference

12 December 2020

Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types

1 reference

12 December 2020

ATP flux is controlled by a voltage-gated channel from the mitochondrial outer membrane

1 reference

12 December 2020

Dynamics of nucleotides in VDAC channels: structure-specific noise generation

1 reference

12 December 2020

Atomic-level simulation of current-voltage relationships in single-file ion channels

1 reference

12 December 2020

The electrostatics of VDAC: implications for selectivity and gating

1 reference

12 December 2020

Selectivity Changes in Site-Directed Mutants of the VDAC Ion Channel: Structural Implications

1 reference

12 December 2020

VDAC channels mediate and gate the flow of ATP: implications for the regulation of mitochondrial function

1 reference

12 December 2020

Gating charge displacement in voltage-gated ion channels involves limited transmembrane movement

1 reference

12 December 2020

Molecular dynamics modeling of tubulin C-terminal tail interactions with the microtubule surface

1 reference

12 December 2020

Energetics of ion conduction through the gramicidin channel

1 reference

12 December 2020

VDAC regulation: role of cytosolic proteins and mitochondrial lipids

1 reference

12 December 2020

Identifiers

DOI

10.1021/BI4011495

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24245503%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24245503%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

24245503

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24245503%20AND%20SRC:MED&resulttype=core&format=json