(Q34395366)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

title

Genometa--a fast and accurate classifier for short metagenomic shotgun reads (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

1 reference

1

1 reference

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12 February 2020

Volker Ahlers

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

author name string

Jens Neugebauer

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Nils Beckmann

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Benedikt Friedrich

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Burim Kameri

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Svea Kokott

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Malte Paetow

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Björn Siekmann

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Matthias Wieding-Drewes

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Markus Wienhöfer

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Stefan Wolf

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Burkhard Tümmler

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Frauke Sprengel

14

1 reference

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12 February 2020

language of work or name

English

0 references

publication date

21 August 2012

1 reference

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12 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

page(s)

e41224

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

12 February 2020

copyright license

start time

21 August 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

6 July 2018

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WebMGA: a customizable web server for fast metagenomic sequence analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Taxonomic classification of metagenomic shotgun sequences with CARMA3.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

6 July 2018

1 reference

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Strain-resolved community genomic analysis of gut microbial colonization in a premature infant

6 July 2018

1 reference

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MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks.

6 July 2018

1 reference

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Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics

6 July 2018

1 reference

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Direct sequencing of the human microbiome readily reveals community differences

6 July 2018

1 reference

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QIIME allows analysis of high-throughput community sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

A human gut microbial gene catalogue established by metagenomic sequencing

6 July 2018

1 reference

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Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard.

6 July 2018

1 reference

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A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

6 July 2018

1 reference

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Sequencing technologies - the next generation

6 July 2018

1 reference

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The NIH Human Microbiome Project

6 July 2018

1 reference

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Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome

6 July 2018

1 reference

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The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

6 July 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

6 July 2018

1 reference

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A core gut microbiome in obese and lean twins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Metagenomic diagnosis of bacterial infections

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

MetaSim: a sequencing simulator for genomics and metagenomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Keeping up with the next generation: massively parallel sequencing in clinical diagnostics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

A statistical toolbox for metagenomics: assessing functional diversity in microbial communities

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

MEGAN analysis of metagenomic data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Towards a genome-based taxonomy for prokaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Environmental genome shotgun sequencing of the Sargasso Sea

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

Visual and statistical comparison of metagenomes

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3424124

10.1371/JOURNAL.PONE.0041224

27 October 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22927906%20AND%20SRC:MED&resulttype=core&format=json