(Q34406390)

English

DNA looping

scientific article

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scholarly article

1 reference

Europe PubMed Central

2 August 2017

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Europe PubMed Central

DNA looping. (English)

1 reference

Europe PubMed Central

2 August 2017

author name string

K S Matthews

1

1 reference

Europe PubMed Central

2 August 2017

publication date

1 March 1992

1 reference

Europe PubMed Central

2 August 2017

Microbiological Reviews

1 reference

Europe PubMed Central

2 August 2017

56

1 reference

Europe PubMed Central

2 August 2017

123-136

1 reference

Europe PubMed Central

2 August 2017

1

1 reference

Europe PubMed Central

2 August 2017

Genetic regulatory mechanisms in the synthesis of proteins

2 references

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6 July 2018

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27 October 2018

lambda Repressor and cro--components of an efficient molecular switch

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6 July 2018

Demonstration of two operator elements in gal: in vitro repressor binding studies

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6 July 2018

Characterization of two mutations in the Escherichia coli galE gene inactivating the second galactose operator and comparative studies of repressor binding

1 reference

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6 July 2018

The locus of sequence-directed and protein-induced DNA bending

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6 July 2018

Energetics of DNA twisting. I. Relation between twist and cyclization probability.

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6 July 2018

A control element within a structural gene: The gal operon of Escherichia coli

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6 July 2018

Lac repressor - lac operator interaction. Circular dichroism study

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6 July 2018

DNA flexibility studied by covalent closure of short fragments into circles

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6 July 2018

An operator at -280 base pairs that is required for repression of araBAD operon promoter: addition of DNA helical turns between the operator and promoter cyclically hinders repression

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6 July 2018

The Location of the Repressor Binding Sites in the lac Operon

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6 July 2018

The lac Repressor Protein: Molecular Shape, Subunit Structure, and Proposed Model for Operator Interaction Based on Structural Studies of Microcrystals

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6 July 2018

Regulation: positive control

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6 July 2018

Cooperative binding of lambda repressors to sites separated by integral turns of the DNA helix

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6 July 2018

DNA loops induced by cooperative binding of lambda repressor

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6 July 2018

DNA supercoiling promotes formation of a bent repression loop in lac DNA.

1 reference

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6 July 2018

Long-range cooperativity between gene regulatory sequences in a prokaryote.

1 reference

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6 July 2018

Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

1 reference

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6 July 2018

Dissociation of the lactose repressor-operator DNA complex: effects of size and sequence context of operator-containing DNA.

1 reference

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6 July 2018

The DNA loop model for ara repression: AraC protein occupies the proposed loop sites in vivo and repression-negative mutations lie in these same sites

1 reference

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6 July 2018

Detection of DNA looping due to simultaneous interaction of a DNA-binding protein with two spatially separated binding sites on DNA

1 reference

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6 July 2018

T cell receptor beta-chain genes in BW5147 and other AKR tumors. Deletion order of murine V beta gene segments and possible 5' regulatory regions.

1 reference

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6 July 2018

Lac repressor is a transient gene-activating protein.

1 reference

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6 July 2018

Probing the structure of gal operator-repressor complexes. Conformation change in DNA.

1 reference

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6 July 2018

lac repressor forms loops with linear DNA carrying two suitably spaced lac operators

1 reference

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6 July 2018

Action at a distance along a DNA.

1 reference

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6 July 2018

Three binding sites for AraC protein are required for autoregulation of araC in Escherichia coli

1 reference

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6 July 2018

Mini-P1 plasmid replication: the autoregulation-sequestration paradox

1 reference

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6 July 2018

Structure of extrachromosomal circular DNAs excised from T-cell antigen receptor alpha and delta-chain loci

1 reference

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6 July 2018

Dual mechanism of repression at a distance in the lac operon

1 reference

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6 July 2018

Upstream operators enhance repression of the lac promoter

1 reference

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6 July 2018

Interaction of spatially separated protein-DNA complexes for control of gene expression: operator conversions

1 reference

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6 July 2018

Probing co-operative DNA-binding in vivo. The lac O1:O3 interaction.

1 reference

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6 July 2018

Enhancer sequences and the regulation of gene transcription

1 reference

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6 July 2018

Alternative DNA loops regulate the arabinose operon in Escherichia coli

1 reference

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6 July 2018

Association of DNA-bound progesterone receptors

1 reference

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6 July 2018

Unusual properties of promoter-up mutations in the Escherichia coli galactose operon and evidence suggesting RNA polymerase-induced DNA bending

1 reference

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6 July 2018

DNA-protein recognition: demonstration of three genetically separated operator elements that are required for repression of the Escherichia coli deoCABD promoters by the DeoR repressor.

1 reference

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6 July 2018

Gene regulation by proteins acting nearby and at a distance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Transcription of Escherichia coli ara in vitro. The cyclic AMP receptor protein requirement for PBAD induction that depends on the presence and orientation of the araO2 site.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Synthetic lac operator mediates repression through lac repressor when introduced upstream and downstream from lac promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

The upstream operator of the Escherichia coli galactose operon is sufficient for repression of transcription initiated at the cyclic AMP-stimulated promoter.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Two operator sites separated by 599 base pairs are required for deoR repression of the deo operon of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Arabinose-induced binding of AraC protein to araI2 activates the araBAD operon promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

The bending of DNA in nucleosomes and its wider implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

DNA supercoiling changes the spacing requirement of two lac operators for DNA loop formation with lac repressor.

1 reference

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6 July 2018

Looping out and deletion mechanism for the immunoglobulin heavy-chain class switch

1 reference

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6 July 2018

Transactivation of the Xenopus rRNA gene promoter by its enhancer

1 reference

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6 July 2018

Excision products of immunoglobulin gene rearrangements

1 reference

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6 July 2018

Multipartite genetic control elements: communication by DNA loop

1 reference

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6 July 2018

The two DNA-binding domains of yeast transcription factor tau as observed by scanning transmission electron microscopy

1 reference

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6 July 2018

RNA polymerase and gal repressor bind simultaneously and with DNA bending to the control region of the Escherichia coli galactose operon.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Gene regulation by steroid hormones

1 reference

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6 July 2018

In vivo DNA loops in araCBAD: size limits and helical repeat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Autoregulation and multiple DNA interactions by a transcriptional regulatory protein in E. coli pili biogenesis

1 reference

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6 July 2018

Long-range activation of transcription by SV40 enhancer is affected by "inhibitory" or "permissive" DNA sequences between enhancer and promoter.

1 reference

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6 July 2018

An enhancer stimulates transcription in trans when attached to the promoter via a protein bridge

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

DNA looping generated by DNA bending protein IHF and the two domains of lambda integrase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

P22 repressor mutants deficient in co-operative binding and DNA loop formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Bacterial gene regulation from distant DNA sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Effect of mutations in the cyclic AMP receptor protein-binding site on araBAD and araC expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Circular DNA is excised by immunoglobulin class switch recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Stable DNA loops in vivo and in vitro: roles in gene regulation at a distance and in biophysical characterization of DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

DNA looping and unlooping by AraC protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

DNA looping in cellular repression of transcription of the galactose operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Interaction of the Escherichia coli Gal repressor protein with its DNA operators in vitro.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

The three operators of the lac operon cooperate in repression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Renaturation and DNA looping promoted by the SV40 large tumour antigen

1 reference

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6 July 2018

The Hin invertasome: protein-mediated joining of distant recombination sites at the enhancer

1 reference

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6 July 2018

DNA-looping and enhancer activity: association between DNA-bound NtrC activator and RNA polymerase at the bacterial glnA promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Cooperative activation of transcription by bovine papillomavirus type 1 E2 can occur over a large distance

1 reference

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6 July 2018

Nucleosome positioning modulates accessibility of regulatory proteins to the mouse mammary tumor virus promoter

1 reference

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6 July 2018

Activation of ara operons by a truncated AraC protein does not require inducer

1 reference

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6 July 2018

Switch circular DNA formed in cytokine-treated mouse splenocytes: evidence for intramolecular DNA deletion in immunoglobulin class switching

1 reference

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6 July 2018

Circular DNA is a product of the immunoglobulin class switch rearrangement

1 reference

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6 July 2018

Transcriptional control by nuclear receptors

1 reference

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6 July 2018

What determines the specificity of action of Drosophila homeodomain proteins?

1 reference

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6 July 2018

A molecular view of the Ultrabithorax homeotic gene of Drosophila

1 reference

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6 July 2018

A bacterial enhancer functions to tether a transcriptional activator near a promoter.

1 reference

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6 July 2018

The activation domain of the bovine papillomavirus E2 protein mediates association of DNA-bound dimers to form DNA loops

1 reference

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6 July 2018

CAP and Nag repressor binding to the regulatory regions of the nagE-B and manX genes of Escherichia coli

1 reference

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6 July 2018

AraC-DNA looping: Orientation and distance-dependent loop breaking by the cyclic AMP receptor protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

NaeI endonuclease binding to pBR322 DNA induces looping

1 reference

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6 July 2018

A switch in the formation of alternative DNA loops modulates lambda site-specific recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

“Second” and “third operator” of the lac operon: An investigation of their role in the regulatory mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

Construction, Isolation and Implications of Repressor-galactosidase . ss-galactosidase Hybrid Molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

6 July 2018

DNA binding characteristics of lactose repressor and the trypsin-resistant core repressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=372857

27 October 2018

Physical properties of DNA in vivo as probed by the length dependence of the lac operator looping process

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27 October 2018

Multipurpose role for RAP1, a yeast DNA looping protein

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27 October 2018

Activator proteins which regulate immunoglobulin heavy chain gene transcription in B lymphocytes

1 reference

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27 October 2018

DNA bending induced by the catabolite activator protein allows ring formation of a 144 bp DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA ring closure mediated by protein HU

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

lac repressor forms stable loops in vitro with supercoiled wild-type lac DNA containing all three natural lac operators

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A transcriptional terminator between enhancer and promoter does not affect remote transcriptional control

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA-binding properties of a lac repressor mutant incapable of forming tetramers

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the gel electrophoresis of looped protein-DNA complexes by computer simulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction of proteins located at a distance along DNA: mechanism of target immunity in the Mu DNA strand-transfer reaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction at a distance between λrepressers disrupts gene activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Specific destruction of the second lac operator decreases repression of the lac operon in Escherichia coli fivefold

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of sequence and distance between two operators on interaction with the lac repressor

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Why should DNA loop?

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhancer-origin interaction in plasmid R6K involves a DNA loop mediated by initiator protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Co-operative interactions between the catabolite gene activator protein and the lac repressor at the lactose promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A potent GAL4 derivative activates transcription at a distance in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single and double loop formation when deoR repressor binds to its natural operator sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RAP-1 factor is necessary for DNA loop formation in vitro at the silent mating type locus HML

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Upstream repression and CRP stimulation of the Escherichia coli L-arabinose operon

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Supercoiling facilitates lac operator-repressor-pseudooperator interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamic analysis of the lactose repressor-operator DNA interaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of supercoiling and sequence context on operator DNA binding with lac repressor

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli lac repressor-operator interaction: equilibrium measurements

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Binding of lac repressor induces different conformational changes on operator and non-operator DNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/1579106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

1 reference

Europe PubMed Central

2 August 2017

1 reference

Europe PubMed Central

2 August 2017

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