(Q34415555)

2 August 2017

title

Gold rotor bead tracking for high-speed measurements of DNA twist, torque and extension (English)

1 reference

2 August 2017

Paul Lebel

1

1 reference

2 August 2017

Aakash Basu

2

1 reference

2 August 2017

Florian C Oberstrass

3

1 reference

2 August 2017

Elsa M Tretter

4

1 reference

2 August 2017

Zev Bryant

5

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2 August 2017

publication date

23 February 2014

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2 August 2017

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2 August 2017

volume

11

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2 August 2017

issue

4

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2 August 2017

page(s)

456-462

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https://scigraph.springernature.com/pub.10.1038/nmeth.2854

2 August 2017

exact match

0 references

cites work

Detection of Steps in Single Molecule Data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Rigid DNA beams for high-resolution single-molecule mechanics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Structural and torsional properties of the RAD51-dsDNA nucleoprotein filament

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Torque measurement at the single-molecule level

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Step detection in single-molecule real time trajectories embedded in correlated noise

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Recent developments in single-molecule DNA mechanics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

ATP binding controls distinct structural transitions of Escherichia coli DNA gyrase in complex with DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Mechanisms for defining supercoiling set point of DNA gyrase orthologs: I. A nonconserved acidic C-terminal tail modulates Escherichia coli gyrase activity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Recent advances in single molecule studies of nucleosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Direct mechanical measurements reveal the material properties of three-dimensional DNA origami

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Ultrahigh-resolution optical trap with single-fluorophore sensitivity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

An optical apparatus for rotation and trapping

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Simple dark-field microscopy with nanometer spatial precision and microsecond temporal resolution.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Contribution of the myosin VI tail domain to processive stepping and intramolecular tension sensing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Direct observation of twisting steps during Rad51 polymerization on DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

The effect of integration time on fluctuation measurements: calibrating an optical trap in the presence of motion blur.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Quantitative modeling and optimization of magnetic tweezers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Twist-stretch coupling and phase transition during DNA supercoiling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Mechanical characterization of protein L in the low-force regime by electromagnetic tweezers/evanescent nanometry.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Determining protein-induced DNA bending in force-extension experiments: theoretical analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Magnetic tweezers measurement of single molecule torque.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

DNA topoisomerases: harnessing and constraining energy to govern chromosome topology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Objective-type dark-field illumination for scattering from microbeads

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Recent advances in optical tweezers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Step length measurement--theory and simulation for tethered bead constant-force single molecule assay

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Thirty years of Escherichia coli DNA gyrase: from in vivo function to single-molecule mechanism.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Extracting dwell time sequences from processive molecular motor data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

DNA overwinds when stretched

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Viewing dynamic assembly of molecular complexes by multi-wavelength single-molecule fluorescence

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

6 July 2018

Mechanisms of helicases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Mechanochemical analysis of DNA gyrase using rotor bead tracking

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Direct observation of base-pair stepping by RNA polymerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Rapid spontaneous accessibility of nucleosomal DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Structural transitions and elasticity from torque measurements on DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Visualizing single molecules inside living cells using total internal reflection fluorescence microscopy.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Magnetic tweezers: micromanipulation and force measurement at the molecular level

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

6 July 2018

Proteins unfold in steps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Direct measurement of the torsional rigidity of single actin filaments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

The elasticity of a single supercoiled DNA molecule

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase

6 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2854

Electromagnetic torque tweezers: a versatile approach for measurement of single-molecule twist and torque.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2854

Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2854

Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2854

Torque spectroscopy of DNA: base-pair stability, boundary effects, backbending, and breathing dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2854

Dynamics of the unbound head during myosin V processive translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2854

Nucleotide binding to DNA gyrase causes loss of DNA wrap

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2854

Optical torque wrench: angular trapping, rotation, and torque detection of quartz microparticles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2854

Transient backbending behavior in the Ising model with fixed magnetization.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4211898

Force-free measurements of the conformations of DNA molecules tethered to a wall

27 October 2018

1 reference

12 December 2020

1 reference

12 December 2020

Negatively supercoiled plasmids contain left-handed Z-DNA segments as detected by specific antibody binding

1 reference

12 December 2020

Soft magnetic tweezers: a proof of principle

1 reference

12 December 2020

Torsional stiffness of single superparamagnetic microspheres in an external magnetic field

1 reference

12 December 2020

Identifiers

DOI

10.1038/NMETH.2854

1 reference

Dimensions Publication ID

2 August 2017

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2 August 2017

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