(Q34445434)

2 August 2017

title

Solvent effects on the energy landscapes and folding kinetics of polyalanine (English)

1 reference

2 August 2017

1 reference

Y Levy

1

1 reference

2 August 2017

J Jortner

series ordinal

2

1 reference

2 August 2017

O M Becker

series ordinal

3

1 reference

2 August 2017

language of work or name

English

0 references

publication date

20 February 2001

1 reference

Proceedings of the National Academy of Sciences of the United States of America

2 August 2017

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

2 August 2017

volume

98

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2 August 2017

issue

5

1 reference

2 August 2017

page(s)

2188-2193

1 reference

Physical reasons for the unusual alpha-helix stabilization afforded by charged or neutral polar residues in alanine-rich peptides

2 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Effective energy function for proteins in solution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Obligatory steps in protein folding and the conformational diversity of the transition state

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Polyalanine-based peptides as models for self-associated beta-pleated-sheet complexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Helix propagation and N-cap propensities of the amino acids measured in alanine-based peptides in 40 volume percent trifluoroethanol

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Helix folding simulations with various initial conformations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Free energy determinants of secondary structure formation: I. alpha-Helices

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Conformational studies of poly-L-alanine in water.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Unusually stable helix formation in short alanine-based peptides

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Unfolding of an ?-helix in water

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

A molecular dynamics simulation of polyalanine: an analysis of equilibrium motions and helix-coil transitions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Molecular dynamics simulations of helix denaturation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Empirical Predictions of Protein Conformation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Role of water on unfolding kinetics of helical peptides studied by molecular dynamics simulations

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

Transmembrane helix structure, dynamics, and interactions: multi-nanosecond molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

Kinetic steps for alpha-helix formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

Protein Folding: A Perspective from Theory and Experiment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

Structural relaxation in atomic clusters: master equation dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

Protein folding funnels: the nature of the transition state ensemble

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

Direct computation of long time processes in peptides and proteins: reaction path study of the coil-to-helix transition in polyalanine.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

Molecular dynamics simulation of the stability of a 22-residue alpha-helix in water and 30% trifluoroethanol

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11226214

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.041611998

1 reference

2 August 2017

0 references

1 reference

2 August 2017

1 reference