(Q34467021)

English

Properties of the Nucleic-acid Bases in Free and Watson-Crick Hydrogen-bonded States: Computational Insights into the Sequence-dependent Features of Double-helical DNA

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

1 reference

Europe PubMed Central

Properties of the Nucleic-acid Bases in Free and Watson-Crick Hydrogen-bonded States: Computational Insights into the Sequence-dependent Features of Double-helical DNA (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

computational biology

1 reference

based on heuristic

inferred from title

author name string

A R Srinivasan

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Ronald R Sauers

2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Marcia O Fenley

3

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Alexander H Boschitsch

4

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Atsushi Matsumoto

5

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Andrew V Colasanti

6

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Wilma K Olson

7

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

publication date

1 March 2009

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Biophysical Reviews

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

13-20

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Multiple tautomers of cytosine identified and characterized by infrared laser spectroscopy in helium nanodroplets: probing structure using vibrational transition moment angles

1 reference

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Base pair analogs in the gas phase

1 reference

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3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

1 reference

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A unified model for the origin of DNA sequence-directed curvature.

1 reference

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Cations as hydrogen bond donors: a view of electrostatic interactions in DNA.

1 reference

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The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology

1 reference

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Vibrational transition moment angles in isolated biomolecules: a structural tool

1 reference

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DNA-cation interactions: quo vadis?

1 reference

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On the molecular discrimination between adenine and guanine by proteins

1 reference

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DNA-cation interactions: The major and minor grooves are flexible ionophores.

1 reference

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1 reference

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Water and ion binding around RNA and DNA (C,G) oligomers

1 reference

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DNA structure and polymerase fidelity

1 reference

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Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA

1 reference

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DNA structure: cations in charge?

1 reference

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DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

1 reference

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A role for CH...O interactions in protein-DNA recognition

1 reference

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A framework for the DNA-protein recognition code of the probe helix in transcription factors: the chemical and stereochemical rules

1 reference

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Classical electrostatics in biology and chemistry

1 reference

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Molecular electrostatic potential of the nucleic acids

1 reference

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Electrostatic potential molecular surfaces

1 reference

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The structure of an oligo(dA).oligo(dT) tract and its biological implications

1 reference

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The molecular origin of DNA-drug specificity in netropsin and distamycin

1 reference

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6 July 2018

Structure and thermal vibrations of adenosine from neutron diffraction data at 123 K.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3016052

6 July 2018

On the Propeller Structure of Isolated Watson-Crick Base Pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3016052

6 July 2018

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3016052

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Sequence-specific recognition of double helical nucleic acids by proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3016052

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The molecular electrostatic potential of the B-DNA helix. VL The regions of the base pairs in poly (dG.dC) and poly (dA.dT)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3016052

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Experimental studies of molecular interactions between nitrogen bases of nucleic acids

1 reference

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1 reference

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1 reference

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Monovalent cations regulate DNA sequence recognition by 434 repressor

1 reference

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A conformational switch controls hepatitis delta virus ribozyme catalysis

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Hybrid boundary element and finite difference method for solving the nonlinear Poisson-Boltzmann equation

1 reference

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Anion binding to nucleic acids

1 reference

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True stabilization energies for the optimal planar hydrogen-bonded and stacked structures of guanine...cytosine, adenine...thymine, and their 9- and 1-methyl derivatives: complete basis set calculations at the MP2 and CCSD(T) levels and comparison w

1 reference

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Computational analysis of hydrogen bonds in protein–RNA complexes for interaction patterns

1 reference

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1 reference

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1 reference

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Sequence dependence of the B-A conformational transition of DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/21218180

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[Atom--atomic potential functions for conformational calculations of nucleic acids]

1 reference

https://pubmed.ncbi.nlm.nih.gov/21218180

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S12551-008-0003-2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

ResearchGate publication ID

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