(Q34501428)

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Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments

scientific article

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

whole genome sequencing

1 reference

based on heuristic

inferred from title

author name string

Egor Dolzhenko

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Andrew D Smith

2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

publication date

24 June 2014

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

15

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

215

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

https://scigraph.springernature.com/pub.10.1186/1471-2105-15-215

0 references

MOABS: model based analysis of bisulfite sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Global epigenomic reconfiguration during mammalian brain development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Detection of significantly differentially methylated regions in targeted bisulfite sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

'Leveling' the playing field for analyses of single-base resolution DNA methylomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Dnmt3a is essential for hematopoietic stem cell differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Epigenome-wide association studies for common human diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Optimally weighted Z-test is a powerful method for combining probabilities in meta-analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

The DNA methylome of human peripheral blood mononuclear cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Generalizing moving averages for tiling arrays using combined p-value statistics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Human DNA methylomes at base resolution show widespread epigenomic differences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Illumina universal bead arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

DNA methylation in cancer: too much, but also too little

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

The human genome browser at UCSC

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Dynamic reprogramming of DNA methylation in the early mouse embryo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Role for DNA methylation in genomic imprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Neurone-specific enolase is a molecular marker for peripheral and central neuroendocrine cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

7 July 2018

Patterns of population epigenomic diversity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

27 October 2018

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230021

27 October 2018

Reactivation of an inactive human X chromosome: evidence for X inactivation by DNA methylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/24962134

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-15-215

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

DBLP publication ID

journals/bmcbi/DolzhenkoS14

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

ResearchGate publication ID

0 references

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