(Q34543998)

2 August 2017

title

Deletion of the RluD pseudouridine synthase promotes SsrA peptide tagging of ribosomal protein S7 (English)

1 reference

2 August 2017

Ryan E Schaub

1

1 reference

2 August 2017

Christopher S Hayes

series ordinal

2

1 reference

2 August 2017

language of work or name

English

0 references

publication date

29 November 2010

1 reference

2 August 2017

published in

Molecular Microbiology

1 reference

2 August 2017

volume

79

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2 August 2017

issue

2

1 reference

2 August 2017

page(s)

331-341

1 reference

Translation factor LepA contributes to tellurite resistance in Escherichia coli but plays no apparent role in the fidelity of protein synthesis

2 August 2017

cites work

1 reference

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Beyond ribosome rescue: tmRNA and co-translational processes

7 July 2018

1 reference

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Ribosomal protein S12 and aminoglycoside antibiotics modulate A-site mRNA cleavage and transfer-messenger RNA activity in Escherichia coli

7 July 2018

1 reference

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Kinetics of paused ribosome recycling in Escherichia coli

7 July 2018

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A role for the 30S subunit E site in maintenance of the translational reading frame

7 July 2018

1 reference

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Amino acid starvation and colicin D treatment induce A-site mRNA cleavage in Escherichia coli

7 July 2018

1 reference

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Pseudouridylation of helix 69 of 23S rRNA is necessary for an effective translation termination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Lon protease degrades transfer-messenger RNA-tagged proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

The tmRNA system for translational surveillance and ribosome rescue.

7 July 2018

1 reference

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Prolyl-tRNA(Pro) in the A-site of SecM-arrested ribosomes inhibits the recruitment of transfer-messenger RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

7 July 2018

1 reference

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A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Ribosome rescue by tmRNA requires truncated mRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Pseudouridines and pseudouridine synthases of the ribosome.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Inhibition of translation termination mediated by an interaction of eukaryotic release factor 1 with a nascent peptidyl-tRNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Identification of endogenous SsrA-tagged proteins reveals tagging at positions corresponding to stop codons.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Crystal structure of the ribosome at 5.5 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

A post-translational modification in the GGQ motif of RF2 from Escherichia coli stimulates termination of translation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

UGA: a dual signal for 'stop' and for recoding in protein synthesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

A direct estimation of the context effect on the efficiency of termination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Fast recycling of Escherichia coli ribosomes requires both ribosome recycling factor (RRF) and release factor RF3

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Structure of the C-terminal end of the nascent peptide influences translation termination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

The second to last amino acid in the nascent peptide as a codon context determinant.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

The identity of the base following the stop codon determines the efficiency of in vivo translational termination in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Translational termination efficiency in mammals is influenced by the base following the stop codon.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Assembly mapping of 30S ribosomal proteins from E. coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Release factors differing in specificity for terminator codons

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Assembly of the 30S subunit from Escherichia coli ribosomes occurs via two assembly domains which are initiated by S4 and S7.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3031961

Competition between SsrA tagging and translational termination at weak stop codons in Escherichia coli.

7 July 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2010.07467.X

The pseudouridine synthase RluD is required for normal ribosome assembly and function in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2010.07467.X

Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2010.07467.X

Methylation of bacterial release factors RF1 and RF2 is required for normal translation termination in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2010.07467.X

Functional specificity of amino acid at position 246 in the tRNA mimicry domain of bacterial release factor 2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2010.07467.X

Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21219455

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Release factor RF3 abolishes competition between release factor RF1 and ribosome recycling factor (RRF) for a ribosome binding site

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21219455

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1111/J.1365-2958.2010.07467.X

1 reference

2 August 2017

1 reference

2 August 2017

1 reference