(Q34558176)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

title

Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

David F. Clayton

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

Christopher N. Balakrishnan

18 January 2020

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

author name string

D E Janes

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

C Chapus

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Y Gondo

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

S Sinha

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

C A Blatti

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

C L Organ

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

M K Fujita

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

publication date

23 December 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

Genome Biology and Evolution

18 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

volume

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

page(s)

102-113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

Three tiers of genome evolution in reptiles

18 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Massive turnover of functional sequence in human and other mammalian genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Genome evolution in Reptilia, the sister group of mammals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

7 July 2018

The genome of a songbird

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Functional characterization of transcription factor motifs using cross-species comparison across large evolutionary distances

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Evidence for pervasive adaptive protein evolution in wild mice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Honey bee aggression supports a link between gene regulation and behavioral evolution.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Discrete molecular states in the brain accompany changing responses to a vocal signal

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

BioMart Central Portal--unified access to biological data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Developmental shifts in gene expression in the auditory forebrain during the sensitive period for song learning

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

The W, X, Y and Z of sex-chromosome dosage compensation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Sexual differentiation of the zebra finch song system: potential roles for sex chromosome genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Natural selection in avian protein-coding genes expressed in brain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Systematic functional characterization of cis-regulatory motifs in human core promoters

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Ultraconservation identifies a small subset of extremely constrained developmental enhancers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Body lice and head lice (Anoplura: Pediculidae) have the smallest genomes of any hemimetabolous insect reported to date

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Regional differences in dosage compensation on the chicken Z chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Deletion of ultraconserved elements yields viable mice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Human genome ultraconserved elements are ultraselected

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

PAML 4: phylogenetic analysis by maximum likelihood

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Ancient noncoding elements conserved in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Genome scan for cis-regulatory DNA motifs associated with social behavior in honey bees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Paleontological evidence to date the tree of life

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Mammalian ultraconserved elements are strongly depleted among segmental duplications and copy number variants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Genomic data analysis using DNA structure: an analysis of conserved nongenic sequences and ultraconserved elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Ultraconserved Elements in the Human Genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Identification and characterization of multi-species conserved sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

A greedy algorithm for aligning DNA sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Genome size and GC-percent in vertebrates as determined by flow cytometry: the triangular relationship

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Body size, metabolic rate, generation time, and the molecular clock

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Evidence for higher rates of nucleotide substitution in rodents than in man

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035132

Origin and evolution of avian microchromosomes

7 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

Conserved noncoding sequences are selectively constrained and not mutation cold spots

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

Adaptive evolution of conserved noncoding elements in mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

Evaluating dosage compensation on the chicken Z chromosome: should effective dosage compensation eliminate sexual bias?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

The relationship between synaptonemal complex length and genome size in four vertebrate classes (Osteicthyes, Reptilia, Aves, Mammalia).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

Relationship between physical and genetic distances along the zebra finch Z chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

Identification and characterization of new long conserved noncoding sequences in vertebrates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

PyEvolve: a toolkit for statistical modelling of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

Frequency-specific modulation of population-level frequency tuning in human auditory cortex

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

CORNA: testing gene lists for regulation by microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

The dynamics of chromosome evolution in birds and mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVQ087

Reference standards for flow cytometry and application in comparative studies of nuclear DNA content

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21183607

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mining treasures from 'junk DNA'

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21183607

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DISTANCE METHODS FOR INFERRING PHYLOGENIES: A JUSTIFICATION

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21183607

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVQ087

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183607%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference