(Q34567811)

3 August 2017

title

Maximum likelihood estimation of frequencies of known haplotypes from pooled sequence data (English)

1 reference

3 August 2017

Darren Kessner

1

1 reference

3 August 2017

Thomas L Turner

series ordinal

2

1 reference

3 August 2017

John Novembre

series ordinal

3

1 reference

3 August 2017

publication date

30 January 2013

1 reference

Molecular Biology and Evolution

3 August 2017

published in

1 reference

3 August 2017

volume

30

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3 August 2017

issue

5

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3 August 2017

page(s)

1145-1158

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Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs

3 August 2017

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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PoolHap: inferring haplotype frequencies from pooled samples by next generation sequencing

7 July 2018

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Experimental selection of hypoxia-tolerant Drosophila melanogaster

7 July 2018

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PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals

7 July 2018

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Estimating haplotype frequencies by combining data from large DNA pools with database information.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

7 July 2018

To pool, or not to pool?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

Genome-wide analysis of a long-term evolution experiment with Drosophila

7 July 2018

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A comparison of methods to detect and quantify the markers of antimalarial drug resistance

7 July 2018

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7 July 2018

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7 July 2018

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Estimating population haplotype frequencies from pooled SNP data using incomplete database information

7 July 2018

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7 July 2018

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The Sequence Alignment/Map format and SAMtools

7 July 2018

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MalHaploFreq: a computer programme for estimating malaria haplotype frequencies from blood samples.

7 July 2018

1 reference

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An expectation maximization approach to estimate malaria haplotype frequencies in multiply infected children

7 July 2018

1 reference

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Genome-wide detection and characterization of positive selection in human populations

7 July 2018

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Microbial ecology: human gut microbes associated with obesity

7 July 2018

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7 July 2018

1 reference

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A high-throughput method for quantifying alleles and haplotypes of the malaria vaccine candidate Plasmodium falciparum merozoite surface protein-1 19 kDa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

A map of recent positive selection in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

Algorithms for inferring haplotypes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

Efficiency of single-nucleotide polymorphism haplotype estimation from pooled DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

Estimation of haplotype frequencies, linkage-disequilibrium measures, and combination of haplotype copies in each pool by use of pooled DNA data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

Computationally feasible estimation of haplotype frequencies from pooled DNA with and without Hardy-Weinberg equilibrium.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

PoooL: an efficient method for estimating haplotype frequencies from large DNA pools.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

Genome-enabled hitchhiking mapping identifies QTLs for stress resistance in natural Drosophila.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

Estimating SNP proportions in populations of malaria parasites by sequencing: validation and applications

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

Real-time quantitative PCR for analysis of genetically mixed infections of malaria parasites: technique validation and applications

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

On the use of DNA pooling to estimate haplotype frequencies.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3670732

27 October 2018

Identifiers

DOI

10.1093/MOLBEV/MST016

1 reference

3 August 2017

1 reference

1 reference

3 August 2017

1 reference