(Q34573540)

3 August 2017

title

Patterns of synonymous codon usage in Drosophila melanogaster genes with sex-biased expression (English)

1 reference

3 August 2017

main subject

Drosophila melanogaster

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1 reference

Tina M Hambuch

1

1 reference

3 August 2017

John Parsch

series ordinal

2

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3 August 2017

language of work or name

English

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publication date

3 June 2005

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3 August 2017

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3 August 2017

volume

170

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3 August 2017

issue

4

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3 August 2017

page(s)

1691-1700

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Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster

3 August 2017

cites work

1 reference

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Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence

7 July 2018

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A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults

7 July 2018

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An evolutionary analysis of orphan genes in Drosophila

7 July 2018

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Translational selection and yeast proteome evolution

7 July 2018

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Rapid evolution of male-biased gene expression in Drosophila

7 July 2018

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Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection.

7 July 2018

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In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein

7 July 2018

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Paucity of genes on the Drosophila X chromosome showing male-biased expression

7 July 2018

1 reference

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Linkage limits the power of natural selection in Drosophila

7 July 2018

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Interactions between natural selection, recombination and gene density in the genes of Drosophila.

7 July 2018

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The rapid evolution of reproductive proteins

7 July 2018

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Patterns of DNA sequence variation suggest the recent action of positive selection in the janus-ocnus region of Drosophila simulans

7 July 2018

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Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila

7 July 2018

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Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

7 July 2018

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Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila

7 July 2018

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Molecular population genetics of male accessory gland proteins in Drosophila

7 July 2018

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Sex gene pool evolution and speciation: a new paradigm

7 July 2018

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tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

7 July 2018

1 reference

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Broad-sense sexual selection, sex gene pool evolution, and speciation

7 July 2018

1 reference

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Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis

7 July 2018

1 reference

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Positive selection drives the evolution of the Acp29AB accessory gland protein in Drosophila.

7 July 2018

1 reference

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Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

7 July 2018

1 reference

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Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila.

7 July 2018

1 reference

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A rapidly evolving homeobox at the site of a hybrid sterility gene

7 July 2018

1 reference

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Different forces drive the evolution of the Acp26Aa and Acp26Ab accessory gland genes in the Drosophila melanogaster species complex

7 July 2018

1 reference

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The correlation between synonymous and nonsynonymous substitutions in Drosophila: mutation, selection or relaxed constraints?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Codon usage bias and tRNA abundance in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Evolution of codon usage bias in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Reduced natural selection associated with low recombination in Drosophila melanogaster.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

The effects of mutation and natural selection on codon bias in the genes of Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Codon catalog usage is a genome strategy modulated for gene expressivity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

7 July 2018

Codon selection in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Codon usage in bacteria: correlation with gene expressivity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

The 'effective number of codons' used in a gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Adaptive protein evolution at the Adh locus in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Evolutionary changes in cis and trans gene regulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Common pattern of evolution of gene expression level and protein sequence in Drosophila

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Effect of strong directional selection on weakly selected mutations at linked sites: implication for synonymous codon usage

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Transcription-associated mutational asymmetry in mammalian evolution

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Selective sweep of a newly evolved sperm-specific gene in Drosophila

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Positive selection driving the evolution of a gene of male reproduction, Acp26Aa, of Drosophila: II. Divergence versus polymorphism

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Positive selection and the molecular evolution of a gene of male reproduction, Acp26Aa of Drosophila

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449783

Sex-dependent gene expression and evolution of the Drosophila transcriptome

27 October 2018

1 reference

12 December 2020

Neutral effect of recombination on base composition in Drosophila

1 reference

12 December 2020

Hill-Robertson interference in Drosophila melanogaster: reply to Marais, Mouchiroud and Duret

1 reference

12 December 2020

Molecular evolution of sex-biased genes in Drosophila

1 reference

12 December 2020

The effect of linkage on limits to artificial selection

1 reference

12 December 2020

Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles

1 reference

12 December 2020

Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

1 reference

12 December 2020

10.1534/GENETICS.104.038109

Identifiers

DOI

1 reference

3 August 2017

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3 August 2017

1 reference