(Q34607302)

3 August 2017

title

The ribosome as a conveying thermal ratchet machine (English)

1 reference

3 August 2017

Alexander S Spirin

1

1 reference

3 August 2017

language of work or name

English

0 references

publication date

5 May 2009

1 reference

Journal of Biological Chemistry

3 August 2017

published in

1 reference

3 August 2017

volume

284

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3 August 2017

issue

32

1 reference

3 August 2017

page(s)

21103-21119

1 reference

Following movement of the L1 stalk between three functional states in single ribosomes.

3 August 2017

cites work

1 reference

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Spontaneous intersubunit rotation in single ribosomes.

7 July 2018

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7 July 2018

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The process of mRNA-tRNA translocation

7 July 2018

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Analysis of structural dynamics in the ribosome by TLS crystallographic refinement

7 July 2018

1 reference

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Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome

7 July 2018

1 reference

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Structures of modified eEF2 80S ribosome complexes reveal the role of GTP hydrolysis in translocation

7 July 2018

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Intersubunit movement is required for ribosomal translocation.

7 July 2018

1 reference

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Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors

7 July 2018

1 reference

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Kinetically competent intermediates in the translocation step of protein synthesis

7 July 2018

1 reference

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Identification of two distinct hybrid state intermediates on the ribosome

7 July 2018

1 reference

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The ribosome as an RNA-based molecular machine.

7 July 2018

1 reference

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Structural basis for messenger RNA movement on the ribosome

7 July 2018

1 reference

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Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements

7 July 2018

1 reference

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Structures of the bacterial ribosome at 3.5 A resolution

7 July 2018

1 reference

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Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

7 July 2018

1 reference

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Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy

7 July 2018

1 reference

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Studies of E. coli Ribosomal RNA and Its Degradation Products

7 July 2018

1 reference

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Composition of various ribonucleic acid fractions from micro-organisms of different deoxyribonucleic acid composition.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Genetic regulatory mechanisms in the synthesis of proteins

7 July 2018

2 references

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7 July 2018

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26 October 2018

1 reference

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Genetical Implications of the Structure of Deoxyribonucleic Acid

7 July 2018

2 references

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7 July 2018

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Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Locking and unlocking of ribosomal motions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Brownian ratchet models of molecular motors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Selection of tRNA by the ribosome requires a transition from an open to a closed form

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Ribosome as a molecular machine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

The path of messenger RNA through the ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Recognition of cognate transfer RNA by the 30S ribosomal subunit

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Crystal structure of the ribosome at 5.5 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Structure of the 30S ribosomal subunit

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

The structural basis of ribosome activity in peptide bond synthesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

A ratchet-like inter-subunit reorganization of the ribosome during translocation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Solution structure of the E. coli 70S ribosome at 11.5 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

An alpha to beta conformational switch in EF-Tu

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Helix unwinding in the effector region of elongation factor EF-Tu-GDP

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Crystal structure of active elongation factor Tu reveals major domain rearrangements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Bioenergetics and protein synthesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

On the mechanism of ribosome function. The hypothesis of locking-unlocking of subparticles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

How does the ribosome work? A hypothesis based on the two subunit construction of the ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Reconstitution of functionally active ribosomes from inactive subparticles and proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

7 July 2018

"Masked" forms of mRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

The second Sir Hans Krebs Lecture. Informosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Polypeptide Chain Elongation in Protein Biosynthesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Studies on the formation of transfer ribonucleic acid-ribosome complexes. 3. The formation of peptide bonds by ribosomes in the absence of supernatant enzymes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Comparison of guanosine triphosphate split and polypeptide synthesis with a purified E. coli system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Ribosomal translocation: facts and models

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Translocation makes the ribosome less compact.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Intermediate states in the movement of transfer RNA in the ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23S RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Protein motors and Maxwell's demons: does mechanochemical transduction involve a thermal ratchet?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Maternal mRNA from clam oocytes can be specifically unmasked in vitro by antisense RNA complementary to the 3'-untranslated region

7 July 2018

1 reference

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Dynamics of single-motor molecules: the thermal ratchet model

7 July 2018

1 reference

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Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes

7 July 2018

1 reference

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30 The use of columns with matrix-bound polyuridylic acid for isolation of translating ribosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Specific selfpacking of the ribosomal 16 S RNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Energetics of the Ribosome

7 July 2018

1 reference

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Contribution of the elongation factors to resistance of ribosomes against inhibitors: Comparison of the inhibitor effects on the factor-dependent and factor-free translation systems

7 July 2018

1 reference

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A correlation between the compositions of deoxyribonucleic and ribonucleic acids.

7 July 2018

1 reference

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Observation of intersubunit movement of the ribosome in solution using FRET.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.X109.001552

Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.X109.001552

Control of translation of masked mRNAs in clam oocytes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2755833

Reversible Dissociation of Ribonucleic Acid

26 October 2018

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https://api.crossref.org/works/10.1074%2FJBC.X109.001552

Translocation in Protein Synthesis: A Hybrid Structure Model

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.X109.001552

The interrelationship between guanosine triphosphatase and amino acid polymerization

21 January 2018

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12 December 2020

The nucleotide composition of ribonucleic acids of soluble and particle fractions in several species of bacteria

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12 December 2020

Specific compact selfpacking of the ribosomal 23 S RNA

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12 December 2020

Studies on the structure of ribosomes. 3. Stepwise unfolding of the 50 s particles without loss of ribosomal protein

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12 December 2020

STUDIES ON THE STRUCTURE OF RIBOSOMES; REVERSIBLE UNFOLDING OF RIBONUCLEOPROTEIN STRANDS AND PACKING MODELS

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12 December 2020

Structural dynamics of translating ribosomes

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A modification of the 30 S ribosomal subparticle is responsible for stimulation of "non-enzymatic" translocation by p-chloromercuribenzoate

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12 December 2020

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The separation and quantitative estimation of purines and pyrimidines in minute amounts

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Ribosomal protein S12 and ‘non-enzymatic’ translocation

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"Nonenzymatic" translation

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12 December 2020

Nucleotide composition of pentose nucleic acids from yeast and mammalian tissues

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12 December 2020

Gene expression in intergeneric merozygotes

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12 December 2020

Use of formaldehyde fixation for studies of ribonucleoprotein particles by caesium chloride density-gradient centrifugation

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12 December 2020

Localization of the elongation factor G on Escherichia coli ribosome

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12 December 2020

Interaction of SH-reagents with the ribosomal 30 S subparticle and 'non-enzymatic' translocation

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12 December 2020

Translocation in ribosomes by attachment-detachment of elongation factor G without GTP cleavage: Evidence from a column-bound ribosome system

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12 December 2020

Biological activity of the re-assembled ribosome-like particles

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12 December 2020

Proton nuclear magnetic resonance study of the ribosomal protein L7/L12 in situ

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12 December 2020

On the molecular weigt of a ribonucleic acid preparation from a ribonucleoprotein complex

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12 December 2020

In vitro recovery of ribosomes and of synthetic activity from synthetically inactive ribosomal subunits

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12 December 2020

A Model of the Functioning Ribosome: Locking and Unlocking of the Ribosome Subparticles

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12 December 2020

The relation of informational RNA to DNA

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12 December 2020

Biochemical activities of nucleic acids. The present position of the coding problem

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12 December 2020

Stimulation of "non-enzymic" translocation in ribosomes by p-chloromercuribenzoate

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12 December 2020

MESSENGER RNA IN EARLY EMBRYOGENESIS

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12 December 2020

Stepwise elongation factor G-promoted elongation of polypeptides on the ribosome without GTP cleavage

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12 December 2020

Localization of elongation factor Tu on the ribosome

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12 December 2020

The composition of the desoxypentose nucleic acids of thymus and spleen

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12 December 2020

On configurations of high-polymer ribonucleic acid macromolecules as revealed by electron microscopy

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12 December 2020

Elongation factor Tu can reduce translation errors in poly(U)-directed cell-free systems

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.X109.001552

1 reference

3 August 2017

1 reference

3 August 2017

1 reference