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English
Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection
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scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
title
Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection
(English)
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
main subject
bias
1 reference
based on heuristic
inferred from title
author name string
Urrutia AO
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
Hurst LD
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
language of work or name
English
0 references
publication date
1 November 2001
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
published in
Genetics
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
volume
159
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
page(s)
1191-1199
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
issue
3
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
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American Academy of Pediatrics: Health care supervision for children with Williams syndrome
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PubMed Central
reference URL
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7 July 2018
Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes
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PubMed Central
reference URL
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7 July 2018
Initial sequencing and analysis of the human genome
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PubMed Central
reference URL
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7 July 2018
Substitution rates in Drosophila nuclear genes: implications for translational selection
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7 July 2018
Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis
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PubMed Central
reference URL
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7 July 2018
Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
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7 July 2018
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
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7 July 2018
Retroviral transfer and expression of a humanized, red-shifted green fluorescent protein gene into human tumor cells
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
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7 July 2018
Codon usage bias and tRNA abundance in Drosophila
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
7 July 2018
Evolution of codon usage bias in Drosophila
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
7 July 2018
What drives codon choices in human genes?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
7 July 2018
The human genome: organization and evolutionary history
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PubMed Central
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7 July 2018
A "humanized" green fluorescent protein cDNA adapted for high-level expression in mammalian cells
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
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7 July 2018
DNA sequence evolution: the sounds of silence
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
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7 July 2018
Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
7 July 2018
Selection on silent sites in the rodent H3 histone gene family
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
7 July 2018
Codon usage in bacteria: correlation with gene expressivity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
7 July 2018
ACNUC: a nucleic acid sequence data base and analysis system
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
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7 July 2018
Non-Darwinian Evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
7 July 2018
Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
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7 July 2018
The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
7 July 2018
Evolution of the genome and the genetic code: selection at the dinucleotide level by methylation and polyribonucleotide cleavage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
7 July 2018
An analysis of codon usage in mammals: selection or mutation bias?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
7 July 2018
The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
26 October 2018
The covariation between TpA deficiency, CpG deficiency, and G+C content of human isochores is due to a mathematical artifact.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461876
retrieved
26 October 2018
Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/11729162
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Codon optimization, genetic insulation, and an rtTA reporter improve performance of the tetracycline switch
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/11729162
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
PMCID
1461876
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
PubMed ID
11729162
1 reference
stated in
Europe PubMed Central
PMCID
1461876
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11729162%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 December 2019
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