(Q34622498)

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Time-resolved fluorescence resonance energy transfer studies of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes

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scholarly article

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Europe PubMed Central

PubMed publication ID

3 August 2017

1 reference

Europe PubMed Central

Time-resolved fluorescence resonance energy transfer studies of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes (English)

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

author name string

Parkhurst LJ

1

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Parkhurst KM

2

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Powell R

3

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Wu J

4

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Williams S

5

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

publication date

1 January 2001

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Europe PubMed Central

PubMed publication ID

3 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

61

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Europe PubMed Central

PubMed publication ID

3 August 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

180-200

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Crystal structure of the nucleosome core particle at 2.8 A resolution

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Action at a distance along a DNA.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Action at a distance: DNA-looping and initiation of transcription

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Cooperative binding of lambda repressors to sites separated by integral turns of the DNA helix

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Crystal structure of a yeast TBP/TATA-box complex

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Co-crystal structure of TBP recognizing the minor groove of a TATA element

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Crystal structure of a human TATA box-binding protein/TATA element complex

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

How proteins recognize the TATA box

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

TATA element recognition by the TATA box-binding protein has been conserved throughout evolution

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

DNA sequence determinants of CAP-induced bending and protein binding affinity.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Minor groove-binding architectural proteins: structure, function, and DNA recognition.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Structural basis for DNA bending by the architectural transcription factor LEF-1

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

The locus of sequence-directed and protein-induced DNA bending

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

DNA bending at adenine . thymine tracts

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Determination of the extent of DNA bending by an adenine-thymine tract

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Bent helical structure in kinetoplast DNA.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Direct measurement of thermodynamic and kinetic parameters of DNA triple helix formation by fluorescence spectroscopy

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Conformational flexibility of three-way DNA junctions containing unpaired nucleotides.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Conformational distributions of a four-way DNA junction revealed by time-resolved fluorescence resonance energy transfer.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Zwischenmolekulare Energiewanderung und Fluoreszenz

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Global features of DNA structure by comparative gel electrophoresis

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Fluorescence resonance energy transfer as a probe of DNA structure and function

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Orientation factor in steady-state and time-resolved resonance energy transfer measurements

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Anisotropy decay of fluorescence as an experimental approach to protein dynamics

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Effect of librational motion on fluorescence depolarization and nuclear magnetic resonance relaxation in macromolecules and membranes

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

A theory of fluorescence polarization decay in membranes

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Simultaneous binding and bending of promoter DNA by the TATA binding protein: real time kinetic measurements

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Statistical length of DNA from light scattering.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Resolution of end-to-end distance distributions of flexible molecules using quenching-induced variations of the Forster distance for fluorescence energy transfer

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Determination of distance distribution functions by singlet-singlet energy transfer

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Fluorescence studies of DNA and RNA structure and dynamics

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Luminescence resonance energy transfer analysis of RNA polymerase complexes

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Flexibility of DNA.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Sequence-directed curvature of DNA.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Bending and curvature calculations in B-DNA.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Sequence-dependent DNA structure: tetranucleotide conformational maps

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Crystal structure of CATGGCCATG and its implications for A-tract bending models

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Crystal structure analysis of a complete turn of B-DNA

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Curved DNA without AA/TT dinucleotide step

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Sequence-dependent dynamics of TATA-Box binding sites

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Global structure and mechanical properties of a 10-bp nucleosome positioning motif

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Dynamic bending rigidity of a 200-bp DNA in 4 mM ionic strength: a transient polarization grating study

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

The control of protein stability and association by weak interactions with water: how do solvents affect these processes?

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

In disperse solution, "osmotic stress" is a restricted case of preferential interactions

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Macromolecules and water: probing with osmotic stress

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

DNA bending by GCN4 mutants bearing cationic residues

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Electrostatic effects in DNA bending by GCN4 mutants

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Fos-Jun heterodimers and Jun homodimers bend DNA in opposite orientations: implications for transcription factor cooperativity

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

The general transcription factors of RNA polymerase II

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

RNA polymerase II holoenzymes and subcomplexes.

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Bidirectional binding of the TATA box binding protein to the TATA box

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

High affinity interaction of yeast transcriptional regulator, Mot1, with TATA box-binding protein (TBP).

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

MOT1-catalyzed TBP-DNA disruption: uncoupling DNA conformational change and role of upstream DNA

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

The nucleosome core all wrapped up

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Atomic force microscopy of parallel DNA branched junction arrays

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

ENERGY TRANSFER. A SYSTEM WITH RELATIVELY FIXED DONOR-ACCEPTOR SEPARATION

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Donor-acceptor distance distributions in a double-labeled fluorescent oligonucleotide both as a single strand and in duplexes

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Deoxyribonueleate solutions: Sedimentation in a density gradient, partial specific volumes, density and refractive index increments, and preferential interactions

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Distance distribution in a dye-linked oligonucleotide determined by time-resolved fluorescence energy transfer

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Bending and flexibility of kinetoplast DNA

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Sequence-dependent DNA structure: dinucleotide conformational maps

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

TATA box DNA deformation with and without the TATA box-binding protein

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Inherent DNA curvature and flexibility correlate with TATA box functionality

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

DNA sequence-dependent differences in TATA-binding protein-induced DNA bending in solution are highly sensitive to osmolytes

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complex

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Thermodynamic and Kinetic Characterization of the Binding of the TATA Binding Protein to the Adenovirus E4 Promoter

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

DNA sequence-specific recognition by the Saccharomyces cerevisiae "TATA" binding protein: promoter-dependent differences in the thermodynamics and kinetics of binding

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Marked stepwise differences within a common kinetic mechanism characterize TATA-binding protein interactions with two consensus promoters

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

The TATA-binding protein from Saccharomyces cerevisiae oligomerizes in solution at micromolar concentrations to form tetramers and octamers

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Participation of the amino-terminal domain in the self-association of the full-length yeast TATA binding protein

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Dimer dissociation and thermosensitivity kinetics of the Saccharomyces cerevisiae and human TATA binding proteins

1 reference

https://api.crossref.org/works/10.1002%2FBIP.10138

21 January 2018

Identifiers

10.1002/BIP.10138

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

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