(Q34669888)

3 August 2017

title

Hydrophobic aided replica exchange: an efficient algorithm for protein folding in explicit solvent (English)

1 reference

3 August 2017

0 references

1 reference

Pu Liu

1

1 reference

3 August 2017

Xuhui Huang

series ordinal

2

1 reference

3 August 2017

Ruhong Zhou

series ordinal

3

1 reference

3 August 2017

B J Berne

series ordinal

4

1 reference

3 August 2017

language of work or name

English

0 references

publication date

1 September 2006

1 reference

Journal of Physical Chemistry B

3 August 2017

number of pages

5

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

3 August 2017

volume

110

1 reference

3 August 2017

issue

38

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3 August 2017

page(s)

19018-19022

1 reference

Replica exchange with solute tempering: a method for sampling biological systems in explicit water

3 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Toward high-resolution de novo structure prediction for small proteins.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Dewetting-induced collapse of hydrophobic particles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Absolute comparison of simulated and experimental protein-folding dynamics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

The free energy landscape for beta hairpin folding in explicit water

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

A statistical mechanical model for beta-hairpin kinetics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Folding dynamics and mechanism of beta-hairpin formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Folding of Protein G B1 Domain Studied by the Conformational Characterization of Fragments Comprising Its Secondary Structure Elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Nanopore-protein interactions dramatically alter stability and yield of the native state in restricted spaces.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Efficient sampling of protein structures by model hopping.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Observation of a dewetting transition in the collapse of the melittin tetramer

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Free energy surfaces of beta-hairpin and alpha-helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Mimicking the action of folding chaperones in molecular dynamics simulations: Application to the refinement of homology-based protein structures

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057047

Hydrophobic collapse in multidomain protein folding

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16986898

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Exploring the kinetic requirements for enhancement of protein folding rates in the GroEL cavity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16986898

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/JP060365R

1 reference

3 August 2017

1 reference

3 August 2017

1 reference