(Q34679216)

3 August 2017

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title

Combining structural and bioinformatics methods for the analysis of functionally important residues in DNA glycosylases (English)

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3 August 2017

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Dmitry O Zharkov

1

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PubMed ID

12057763

3 August 2017

Arthur P Grollman

series ordinal

2

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3 August 2017

1 June 2002

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Free Radical Biology and Medicine

3 August 2017

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3 August 2017

32

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3 August 2017

12

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3 August 2017

1254-1263

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X-ray structure of T4 endonuclease V: an excision repair enzyme specific for a pyrimidine dimer

3 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

The structural basis of specific base-excision repair by uracil-DNA glycosylase

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Structural basis for the excision repair of alkylation-damaged DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

DNA bending and a flip-out mechanism for base excision by the helix–hairpin–helix DNA glycosylase, Escherichia coli AlkA

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

MutY DNA glycosylase: base release and intermediate complex formation

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Evidence that MutY is a monofunctional glycosylase capable of forming a covalent Schiff base intermediate with substrate DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Role for lysine 142 in the excision of adenine from A:G mispairs by MutY DNA glycosylase of Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Substrate specificity and reaction mechanism of murine 8-oxoguanine-DNA glycosylase

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

A phylogenomic study of DNA repair genes, proteins, and processes

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Distinguishing Homologous from Analogous Proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

The classification of amino acid conservation.

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

[29] Identification of functional residues and secondary structure from protein multiple sequence alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Maximum-likelihood approach for gene family evolution under functional divergence.

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Repair of oxidative DNA damage in gram-positive bacteria: the Lactococcus lactis Fpg protein

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Substrate specificity of Deinococcus radiodurans Fpg protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Alternative forms of formamidopyrimidine-DNA glycosylase from Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

The COG database: new developments in phylogenetic classification of proteins from complete genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

A genomic perspective on protein families

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Statistical methods for testing functional divergence after gene duplication

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Chemistry of Glycosylases and Endonucleases Involved in Base-Excision Repair

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Identification of the structural and functional domains of MutY, an Escherichia coli DNA mismatch repair enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Specific recognition of A/G and A/7,8-dihydro-8-oxoguanine (8-oxoG) mismatches by Escherichia coli MutY: removal of the C-terminal domain preferentially affects A/8-oxoG recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Endonuclease III is an iron-sulfur protein

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

A substrate recognition role for the [4Fe-4S]2+ cluster of the DNA repair glycosylase MutY

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Characterization ofEscherichia coliEndonuclease VIII

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Crystal structure of a repair enzyme of oxidatively damaged DNA, MutM (Fpg), from an extreme thermophile, Thermus thermophilus HB8

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

NH2-terminal proline acts as a nucleophile in the glycosylase/AP-lyase reaction catalyzed by Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg) protein

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Characterization of a cross-linked DNA-endonuclease VIII repair complex by electrospray ionization mass spectrometry

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Involvement of phylogenetically conserved acidic amino acid residues in catalysis by an oxidative DNA damage enzyme formamidopyrimidine glycosylase

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Mechanism of action of base release by Escherichia coli Fpg protein: role of lysine 155 in catalysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

Release of normal bases from intact DNA by a native DNA repair enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0891-5849%2802%2900828-6

7 January 2021

10.1016/S0891-5849(02)00828-6

Identifiers

DOI

1 reference

3 August 2017

1 reference

PubMed ID

12057763