(Q34699766)

4 August 2017

title

Analysis of in situ pre-mRNA targets of human splicing factor SF1 reveals a function in alternative splicing (English)

1 reference

alternative mRNA splicing, via spliceosome

4 August 2017

main subject

1 reference

4

1 reference

4 August 2017

Margherita Corioni

1

1 reference

4 August 2017

Nicolas Antih

series ordinal

2

1 reference

4 August 2017

Goranka Tanackovic

series ordinal

3

1 reference

4 August 2017

Angela Krämer

series ordinal

5

1 reference

4 August 2017

language of work or name

English

0 references

publication date

9 November 2010

1 reference

4 August 2017

published in

Nucleic Acids Research

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4 August 2017

volume

39

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4 August 2017

issue

5

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4 August 2017

page(s)

1868-1879

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

4 August 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3061054/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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7 July 2018

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7 July 2018

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An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

7 July 2018

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Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

7 July 2018

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7 July 2018

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7 July 2018

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Identification of nuclear and cytoplasmic mRNA targets for the shuttling protein SF2/ASF

7 July 2018

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Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense?

7 July 2018

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Splicing factors SF1 and U2AF associate in extraspliceosomal complexes

7 July 2018

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7 July 2018

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Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes

7 July 2018

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7 July 2018

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Increased susceptibility of Sf1(+/-) mice to azoxymethane-induced colon tumorigenesis

7 July 2018

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U2AF-homology motif interactions are required for alternative splicing regulation by SPF45

7 July 2018

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Control of pre-mRNA splicing by the general splicing factors PUF60 and U2AF(65)

7 July 2018

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Involvement of splicing factor-1 in beta-catenin/T-cell factor-4-mediated gene transactivation and pre-mRNA splicing.

7 July 2018

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Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors

7 July 2018

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Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment

7 July 2018

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An interaction between U2AF 65 and CF I(m) links the splicing and 3' end processing machineries

7 July 2018

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Structural basis for polypyrimidine tract recognition by the essential pre-mRNA splicing factor U2AF65.

7 July 2018

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RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans

7 July 2018

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Unusual intron conservation near tissue-regulated exons found by splicing microarrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Multiple U2AF65 binding sites within SF3b155: thermodynamic and spectroscopic characterization of protein-protein interactions among pre-mRNA splicing factors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

CLIP: a method for identifying protein-RNA interaction sites in living cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Beta-catenin interacts with the FUS proto-oncogene product and regulates pre-mRNA splicing.

7 July 2018

1 reference

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Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition

7 July 2018

1 reference

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7 July 2018

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Human splicing factor SF3a, but not SF1, is essential for pre-mRNA splicing in vivo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Identification of alternative splicing regulators by RNA interference in Drosophila

7 July 2018

1 reference

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7 July 2018

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Nuclear retention of unspliced mRNAs in yeast is mediated by perinuclear Mlp1.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

CLIP identifies Nova-regulated RNA networks in the brain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Sex lethal and U2 small nuclear ribonucleoprotein auxiliary factor (U2AF65) recognize polypyrimidine tracts using multiple modes of binding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Visibly stressed: the role of eIF2, TIA-1, and stress granules in protein translation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Analysis of gene function in somatic mammalian cells using small interfering RNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Structural basis for recognition of the intron branch site RNA by splicing factor 1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

The transcription elongation factor CA150 interacts with RNA polymerase II and the pre-mRNA splicing factor SF1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Recognition of RNA branch point sequences by the KH domain of splicing factor 1 (mammalian branch point binding protein) in a splicing factor complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Initial sequencing and analysis of the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Kinetic role for mammalian SF1/BBP in spliceosome assembly and function after polypyrimidine tract recognition by U2AF.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Functional association of U2 snRNP with the ATP-independent spliceosomal complex E

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

A dual role for BBP/ScSF1 in nuclear pre-mRNA retention and splicing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

The carboxyl terminus of vertebrate poly(A) polymerase interacts with U2AF 65 to couple 3'-end processing and splicing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Splicing factor SF1 from Drosophila and Caenorhabditis: presence of an N-terminal RS domain and requirement for viability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Transient interaction of BBP/ScSF1 and Mud2 with the splicing machinery affects the kinetics of spliceosome assembly

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

The transcriptional repressor ZFM1 interacts with and modulates the ability of EWS to activate transcription

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Conservation of functional domains involved in RNA binding and protein-protein interactions in human and Saccharomyces cerevisiae pre-mRNA splicing factor SF1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Three recognition events at the branch-site adenine.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

Cloning and domain structure of the mammalian splicing factor U2AF

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061054

A pathway of sequential arginine-serine-rich domain-splicing signal interactions during mammalian spliceosome assembly

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1042

Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3' end processing and splicing.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1042

Interaction of U2AF65 RS region with pre-mRNA branch point and promotion of base pairing with U2 snRNA [corrected]

21 January 2018

1 reference

12 December 2020

Branch site haplotypes that control alternative splicing

1 reference

12 December 2020

An extended RNA binding site for the yeast branch point-binding protein and the role of its zinc knuckle domains in RNA binding

1 reference

12 December 2020

Mutations in the SF1-U2AF59-U2AF23 complex cause exon skipping in Schizosaccharomyces pombe

1 reference

12 December 2020

Intron recognition comes of AGe

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKQ1042

1 reference

4 August 2017

1 reference

4 August 2017

1 reference