(Q34699801)

4 August 2017

title

YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes (English)

1 reference

4 August 2017

1 reference

Yoshihiro Handa

1

1 reference

4 August 2017

Noriyuki Inaho

series ordinal

2

1 reference

4 August 2017

Nobukazu Nameki

series ordinal

3

1 reference

4 August 2017

language of work or name

English

0 references

publication date

3 November 2010

1 reference

4 August 2017

published in

Nucleic Acids Research

1 reference

4 August 2017

volume

39

1 reference

4 August 2017

issue

5

1 reference

4 August 2017

page(s)

1739-1748

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

4 August 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Solution structure of the catalytic domain of the mitochondrial protein ICT1 that is essential for cell vitality

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Role of the C-terminal tail of SmpB in the early stage of trans-translation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Beyond ribosome rescue: tmRNA and co-translational processes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Kinetics of paused ribosome recycling in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Insights into Translational Termination from the Structure of RF2 Bound to the Ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Structural basis for translation termination on the 70S ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

NMR structure of the peptidyl-tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide chain release factors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Ribosome biogenesis and the translation process in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

The tmRNA system for translational surveillance and ribosome rescue.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Protein tagging at rare codons is caused by tmRNA action at the 3' end of nonstop mRNA generated in response to ribosome stalling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Ribosome binding proteins YhbH and YfiA have opposite functions during 100S formation in the stationary phase of Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Competition between trans-translation and termination or elongation of translation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Ribosome rescue by tmRNA requires truncated mRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Structure of the Escherichia coli ribosomal termination complex with release factor 2

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

A cryo-electron microscopic study of ribosome-bound termination factor RF2

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Release of peptide promoted by the GGQ motif of class 1 release factors regulates the GTPase activity of RF3.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Mitochondrial Genome Evolution and the Origin of Eukaryotes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Global transposon mutagenesis and a minimal Mycoplasma genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Ribosome modulation factor: stationary growth phase-specific inhibitor of ribosome functions from Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Sequence comparison of new prokaryotic and mitochondrial members of the polypeptide chain release factor family predicts a five-domain model for release factor structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

In vitro trans translation mediated by alanine-charged 10Sa RNA.

7 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1097

Signal transduction by DR3, a death domain-containing receptor related to TNFR-1 and CD95

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1097

Analysis of nonstop mRNA translation in the absence of tmRNA in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1097

New features of the ribosome and ribosomal inhibitors: non-enzymatic recycling, misreading and back-translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1097

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1097

Cell-free translation reconstituted with purified components

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1097

The role of SmpB protein in trans-translation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1097

Crystal structure of the 30 s ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 s RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1097

Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061065

Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21051357

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21051357

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Requirement of transfer-messenger RNA for the growth of Bacillus subtilis under stresses

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21051357

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ1097

1 reference

4 August 2017

1 reference

4 August 2017

1 reference