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Protein surface salt bridges and paths for DNA wrapping
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scholarly article
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Europe PubMed Central
PubMed ID
12127449
retrieved
4 August 2017
review article
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Europe PubMed Central
title
Protein surface salt bridges and paths for DNA wrapping
(English)
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Europe PubMed Central
PubMed ID
12127449
retrieved
4 August 2017
author name string
Ruth M Saecker
series ordinal
1
1 reference
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Europe PubMed Central
PubMed ID
12127449
retrieved
4 August 2017
M Thomas Record
series ordinal
2
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Europe PubMed Central
PubMed ID
12127449
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4 August 2017
publication date
1 June 2002
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Europe PubMed Central
PubMed ID
12127449
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4 August 2017
published in
Current Opinion in Structural Biology
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Europe PubMed Central
PubMed ID
12127449
retrieved
4 August 2017
volume
12
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Europe PubMed Central
PubMed ID
12127449
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4 August 2017
issue
3
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Europe PubMed Central
PubMed ID
12127449
retrieved
4 August 2017
page(s)
311-319
1 reference
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Europe PubMed Central
PubMed ID
12127449
retrieved
4 August 2017
cites work
Recognition of specific DNA sequences.
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An overview of the structures of protein-DNA complexes
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Structural features of protein-nucleic acid recognition sites
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7 January 2021
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Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition?
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Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level
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Coupling of local folding to site-specific binding of proteins to DNA
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Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding.
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Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites
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7 January 2021
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Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm
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If the loop fits...
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7 January 2021
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Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: interpretation in terms of coupled processes of formation and association of single-stranded helices
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A highly salt-dependent enthalpy change for Escherichia coli SSB protein-nucleic acid binding due to ion-protein interactions
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Calorimetric studies of E. coli SSB protein-single-stranded DNA interactions. Effects of monovalent salts on binding enthalpy
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Adenine base unstacking dominates the observed enthalpy and heat capacity changes for the Escherichia coli SSB tetramer binding to single-stranded oligoadenylates
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Large contributions of coupled protonation equilibria to the observed enthalpy and heat capacity changes for ssDNA binding to Escherichia coli SSB protein
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Multiple DNA-protein interactions governing high-precision DNA transactions
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Crystal structure of the nucleosome core particle at 2.8 A resolution
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Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions
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Structure of the DNA binding domain of E. coli SSB bound to ssDNA
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Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn
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Wrapping of flanking non-operator DNA in lac repressor-operator complexes: implications for DNA looping
1 reference
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7 January 2021
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A model for the mechanism of strand passage by DNA gyrase
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Electron microscopic study of (A)BC excinuclease. DNA is sharply bent in the UvrB-DNA complex
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Architecture of nucleotide excision repair complexes: DNA is wrapped by UvrB before and after damage recognition
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Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.
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Thermodynamic extent of counterion release upon binding oligolysines to single-stranded nucleic acids
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Thermodynamics of single-stranded RNA binding to oligolysines containing tryptophan
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Interaction of an N-methylated polyamine analogue, hexamethonium(2+), with sodium-DNA: quantitative nitrogen-14 and sodium-23 NMR relaxation rate studies of the cation-exchange process
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Compensating effects of opposing changes in putrescine (2+) and K+ concentrations on lac repressor-lac operator binding: in vitro thermodynamic analysis and in vivo relevance
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Ion concentration and temperature dependence of DNA binding: comparison of PurR and LacI repressor proteins
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Consensus DNA site for the Escherichia coli catabolite gene activator protein (CAP): CAP exhibits a 450-fold higher affinity for the consensus DNA site than for the E. coli lac DNA site
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1 reference
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Micrococcus luteus DNA gyrase: active components and a model for its supercoiling of DNA
1 reference
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Crossref
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7 January 2021
based on heuristic
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Mapping the topography of DNA wrapped around gyrase by nucleolytic and chemical probing of complexes of unique DNA sequences.
1 reference
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reference URL
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7 January 2021
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Conversion of DNA gyrase into a conventional type II topoisomerase
1 reference
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Crystal structure of the breakage-reunion domain of DNA gyrase
1 reference
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reference URL
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7 January 2021
based on heuristic
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Crystal structure of an N-terminal fragment of the DNA gyrase B protein.
1 reference
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reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Dimerization of Escherichia coli DNA-gyrase B provides a structural mechanism for activating the ATPase catalytic center
1 reference
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7 January 2021
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Structure and mechanism of DNA topoisomerase II
1 reference
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7 January 2021
based on heuristic
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Cooperative and anticooperative effects in binding of the first and second plasmid Osym operators to a LacI tetramer: evidence for contributions of non-operator DNA binding by wrapping and looping
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
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inferred from DOI database lookup
Crystal structure of lac repressor core tetramer and its implications for DNA looping
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
based on heuristic
inferred from DOI database lookup
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1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
based on heuristic
inferred from DOI database lookup
DNA supercoiling changes the spacing requirement of two lac operators for DNA loop formation with lac repressor.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
based on heuristic
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In vivo thermodynamic analysis of repression with and without looping in lac constructs. Estimates of free and local lac repressor concentrations and of physical properties of a region of supercoiled plasmid DNA in vivo.
1 reference
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Crossref
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7 January 2021
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Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator
1 reference
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reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Designed hyperstable Lac repressor.DNA loop topologies suggest alternative loop geometries
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
based on heuristic
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Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.
1 reference
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Crossref
reference URL
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7 January 2021
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1 reference
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reference URL
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7 January 2021
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1 reference
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7 January 2021
based on heuristic
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Structural basis for H-NS-mediated trapping of RNA polymerase in the open initiation complex at the rrnB P1.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
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HO. and DNase I probing of E sigma 70 RNA polymerase--lambda PR promoter open complexes: Mg2+ binding and its structural consequences at the transcription start site
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
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Three-dimensional structure of E. coli core RNA polymerase: promoter binding and elongation conformations of the enzyme.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of UvrABC excinuclease-UV-damaged DNA complexes studied by flow linear dichroism. DNA curved by UvrB and UvrC
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
based on heuristic
inferred from DOI database lookup
Crystal structure of the DNA nucleotide excision repair enzyme UvrB from Thermus thermophilus
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
based on heuristic
inferred from DOI database lookup
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900326-3
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7 January 2021
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Raster3D: photorealistic molecular graphics
1 reference
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reference URL
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7 January 2021
based on heuristic
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Identifiers
DOI
10.1016/S0959-440X(02)00326-3
1 reference
stated in
Europe PubMed Central
PubMed ID
12127449
retrieved
4 August 2017
PubMed ID
12127449
1 reference
stated in
Europe PubMed Central
PubMed ID
12127449
retrieved
4 August 2017
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