(Q34858324)

4 August 2017

title

Formation of sheared G:A base pairs in an RNA duplex modelled after ribozymes, as revealed by NMR. (English)

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4 August 2017

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Katahira M

1

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4 August 2017

Kanagawa M

2

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4 August 2017

Sato H

3

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4 August 2017

Uesugi S

4

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4 August 2017

Fujii S

5

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4 August 2017

Kohno T

6

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4 August 2017

Maeda T

7

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4 August 2017

language of work or name

English

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publication date

1 July 1994

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4 August 2017

published in

Nucleic Acids Research

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4 August 2017

volume

22

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4 August 2017

issue

14

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4 August 2017

page(s)

2752-2759

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The conformation of loop E of eukaryotic 5S ribosomal RNA.

4 August 2017

cites work

1 reference

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High-resolution NMR study of a synthetic oligoribonucleotide with a tetranucleotide GAGA loop that is a substrate for the cytotoxic protein, ricin

8 July 2018

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NMR studies of G:A mismatches in oligodeoxyribonucleotide duplexes modelled after ribozymes

8 July 2018

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Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics

8 July 2018

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Most compact hairpin-turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: an extraordinarily stable structure resistant to nucleases and heat

8 July 2018

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Sequence-dependent structural variations in two right-handed alternating pyrimidine-purine DNA oligomers in solution determined by nuclear Overhauser enhancement measurements

8 July 2018

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Improved spectral resolution in cosy 1H NMR spectra of proteins via double quantum filtering

8 July 2018

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Detection of a guanine X adenine base pair in a decadeoxyribonucleotide by proton magnetic resonance spectroscopy

8 July 2018

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Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins

8 July 2018

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Two-dimensional 1H NMR study of the lambda operator site OL1: a sequential assignment strategy and its application

8 July 2018

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Proton NMR studies on the covalently linked RNA-DNA hybrid r(GCG)d(TATACGC). Assignment of proton resonances by application of the nuclear Overhauser effect

8 July 2018

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A two-dimensional NMR study of the solution structure of a DNA dodecamer comprising the concensus sequence for the specific DNA-binding sites of the glucocorticoid receptor protein

8 July 2018

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Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations

8 July 2018

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One- and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract

8 July 2018

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Helix geometry, hydration, and G.A mismatch in a B-DNA decamer

8 July 2018

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Structure refinement of oligonucleotides by molecular dynamics with nuclear Overhauser effect interproton distance restraints: application to 5' d(C-G-T-A-C-G)2.

8 July 2018

1 reference

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Structures of mismatched base pairs in DNA and their recognition by the Escherichia coli mismatch repair system

8 July 2018

1 reference

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Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base-pairs

8 July 2018

1 reference

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The chemistry of self-splicing RNA and RNA enzymes

8 July 2018

1 reference

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A new model for the bending of DNAs containing the oligo(dA) tracts based on NMR observations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Sequence-dependent structural variations of hammerhead RNA enzymes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Mixed deoxyribo- and ribo-oligonucleotides with catalytic activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

NMR and molecular modeling evidence for a G.A mismatch base pair in a purine-rich DNA duplex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Function of specific 2'-hydroxyl groups of guanosines in a hammerhead ribozyme probed by 2' modifications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Sequence requirements of the hammerhead RNA self-cleavage reaction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Synthesis and NMR study of ribo-oligonucleotides forming a hammerhead-type RNA enzyme system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Minimal sequence requirements for ribozyme activity.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Importance of specific purine amino and hydroxyl groups for efficient cleavage by a hammerhead ribozyme

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

A small metalloribozyme with a two-step mechanism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Very stable mismatch duplexes: structural and thermodynamic studies on tandem G.A mismatches in DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Solution structure of [d(ATGAGCGAATA)]2. Adjacent G:A mismatches stabilized by cross-strand base-stacking and BII phosphate groups

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Chimeric DNA-RNA hammerhead ribozymes have enhanced in vitro catalytic efficiency and increased stability in vivo

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Hydrogen bonding of the 2′ OH in RNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Proton nuclear magnetic resonance investigation of the conformation and dynamics in the synthetic deoxyribonucleic acid decamers d(ATATCGATAT) and d(ATATGCATAT).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308244

Determination of the conformation of d(GGAAATTTCC)2 in solution by use of 1H NMR and restrained molecular dynamics

26 October 2018

1 reference

12 December 2020

Solution structure of an oncogenic DNA duplex containing a G.A mismatch

1 reference

12 December 2020

Thermodynamics of DNA duplexes with adjacent G.cntdot.A mismatches

1 reference

12 December 2020

Kinetic Characterization of Ribonuclease-Resistant 2′-Modified Hammerhead Ribozymes

1 reference

12 December 2020

Proton nuclear Overhauser effect study of the structure of a deoxyoligonucleotide duplex in aqueous solution

1 reference

12 December 2020

Assignment of the non-exchangeable proton resonances of d(C-G-C-G-A-A-T-T-C-G-C-G) using two-dimensional nuclear magnetic resonance methods

1 reference

12 December 2020

The structure of the double-stranded RNA pentamer 5'(CACAG) . 5'(CUGUG) determined by nuclear Overhauser enhancement measurements: Interproton distance determination and structure refinement on the basis of X-ray coordinates

1 reference

12 December 2020

A small catalytic oligoribonucleotide

1 reference

12 December 2020

Construction of a series of several self-cleaving RNA duplexes using synthetic 21-mers

1 reference

12 December 2020

Solid-phase synthesis and high-resolution NMR studies of two synthetic double-helical RNA dodecamers: r(CGCGAAUUCGCG) and r(CGCGUAUACGCG)

1 reference

12 December 2020

Base pairing geometry in GA mismatches depends entirely on the neighboring sequence

1 reference

12 December 2020

NMR study of G.A and A.A pairing in (dGCGAATAAGCG)2

1 reference

12 December 2020

Structural studies of the 5′-phenazinium-tethered matched and G-A-mismatched DNA duplexes by NMR spectroscopy

1 reference

12 December 2020

Solution structure of a GA mismatch DNA sequence, d(CCATGAATGG)2, determined by 2D NMR and structural refinement methods

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/22.14.2752

1 reference

4 August 2017

1 reference

4 August 2017

1 reference