(Q34986223)

5 August 2017

title

Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave (English)

1 reference

5 August 2017

1 reference

6

1 reference

5 August 2017

Marianyoly Ortiz

1

1 reference

5 August 2017

Antje Legatzki

2

1 reference

5 August 2017

Julia W Neilson

3

1 reference

5 August 2017

Brandon Fryslie

4

1 reference

5 August 2017

William M Nelson

5

1 reference

5 August 2017

Carol A Soderlund

7

1 reference

5 August 2017

Barry M Pryor

8

1 reference

5 August 2017

Raina M Maier

9

1 reference

5 August 2017

language of work or name

1 reference

12 September 2013

1 reference

5 August 2017

1 reference

5 August 2017

volume

8

1 reference

5 August 2017

issue

2

1 reference

5 August 2017

page(s)

478-491

1 reference

Life in the dark: metagenomic evidence that a microbial slime community is driven by inorganic nitrogen metabolism

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Comparative analysis of yellow microbial communities growing on the walls of geographically distinct caves indicates a common core of microorganisms involved in their formation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Metagenomic mining for microbiologists.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Ammonia oxidation coupled to CO2 fixation by archaea and bacteria in an agricultural soil

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Microbial nitrate respiration--genes, enzymes and environmental distribution.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Ecological aspects of the distribution of different autotrophic CO2 fixation pathways

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Effect of arbuscular mycorrhizal fungi on plant biomass and the rhizosphere microbial community structure of mesquite grown in acidic lead/zinc mine tailings

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Examining the global distribution of dominant archaeal populations in soil

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Autotrophic ammonia oxidation by soil thaumarchaea.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Autotrophic carbon fixation in archaea.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Soil microbial community responses to multiple experimental climate change drivers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

The genomic basis of trophic strategy in marine bacteria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

IMG ER: a system for microbial genome annotation expert review and curation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Life without light: microbial diversity and evidence of sulfur- and ammonium-based chemolithotrophy in Movile Cave

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Autotrophic carbon dioxide assimilation in Thermoproteales revisited

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Metabolically active microbial communities of yellow and grey colonizations on the walls of Altamira Cave, Spain.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Microbial community biofabrics in a geothermal mine adit

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Accuracy and quality of massively parallel DNA pyrosequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Phylogenetic diversity of bacteria in an earth-cave in Guizhou province, southwest of China.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

MEGAN analysis of metagenomic data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Culturable microbial diversity and the impact of tourism in Kartchner Caverns, Arizona

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Bacterial community structure in the hyperarid core of the Atacama Desert, Chile

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Isolation of an autotrophic ammonia-oxidizing marine archaeon

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

The Holocene Asian monsoon: links to solar changes and North Atlantic climate

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Diverse microbial communities inhabiting ferromanganese deposits in Lechuguilla and Spider Caves

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Immunological detection of Nitrospira-like bacteria in various soils

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Phylogeny and functional expression of ribulose 1,5-bisphosphate carboxylase/oxygenase from the autotrophic ammonia-oxidizing bacterium Nitrosospira sp. isolate 40KI

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Phylogenetic structure of unusual aquatic microbial formations in Nullarbor caves, Australia

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

PCR primers that amplify fungal rRNA genes from environmental samples

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

A Chemoautotrophically Based Cave Ecosystem

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3906820

Enumeration of Archaea and Bacteria in seafloor basalt using real-time quantitative PCR and fluorescence microscopy.

8 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.159

Fermentation of 4-aminobutyrate by Clostridium aminobutyricum: cloning of two genes involved in the formation and dehydration of 4-hydroxybutyryl-CoA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.159

Systematic artifacts in metagenomes from complex microbial communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.159

Metabolically active Crenarchaeota in Altamira Cave.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.159

Microbiological study of the dripping waters in Altamira cave (Santillana del Mar, Spain).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.159

Bacterial and Archaeal Community Structure of Two Adjacent Calcite Speleothems in Kartchner Caverns, Arizona, USA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.159

Extremely acidic, pendulous cave wall biofilms from the Frasassi cave system, Italy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.159

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.159

Autotrophic, sulfur-oxidizing actinobacteria in acidic environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.159

Calcium chelator Quin 2 prevents hydrogen-peroxide-induced DNA breakage and cytotoxicity

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24030597

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

13C-NMR study of autotrophic CO2 fixation pathways in the sulfur-reducing Archaebacterium Thermoproteus neutrophilus and in the phototrophic Eubacterium Chloroflexus aurantiacus

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24030597

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

FOOD WEB STRUCTURE AND THE ROLE OF EPILITHIC BIOFILMS IN CAVE STREAMS

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.159

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2013.159

1 reference

Dimensions Publication ID

5 August 2017

0 references

1 reference

5 August 2017

1 reference