(Q35034662)

5 August 2017

title

Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea (English)

1 reference

5 August 2017

0 references

Lecompte O

1

1 reference

5 August 2017

Ripp R

2

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5 August 2017

Puzos-Barbe V

3

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5 August 2017

Duprat S

4

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5 August 2017

Heilig R

5

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5 August 2017

Dietrich J

6

1 reference

5 August 2017

Thierry JC

7

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5 August 2017

Poch O

8

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5 August 2017

publication date

1 June 2001

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5 August 2017

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5 August 2017

volume

11

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5 August 2017

issue

6

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5 August 2017

page(s)

981-993

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DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches

5 August 2017

cites work

1 reference

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8 July 2018

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From complete genomes to measures of substitution rate variability within and between proteins

8 July 2018

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8 July 2018

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8 July 2018

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An archaeal genomic signature

8 July 2018

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8 July 2018

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Insights into the evolutionary process of genome degradation

8 July 2018

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8 July 2018

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8 July 2018

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DNA repair systems in archaea: mementos from the last universal common ancestor?

8 July 2018

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8 July 2018

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Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences

8 July 2018

1 reference

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Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

8 July 2018

1 reference

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The genomic tree as revealed from whole proteome comparisons

8 July 2018

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Comparative genomes of Chlamydia pneumoniae and C. trachomatis

8 July 2018

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Sulfolobus genome: from genomics to biology

8 July 2018

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Mycoplasma pneumoniae and Mycoplasma genitalium: a comparison of two closely related bacterial species

8 July 2018

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Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori

8 July 2018

1 reference

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Genome phylogeny based on gene content

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

What are archaebacteria: life's third domain or monoderm prokaryotes related to gram-positive bacteria? A new proposal for the classification of prokaryotic organisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Complete Sequence and Gene Organization of the Genome of a Hyper-thermophilic Archaebacterium, Pyrococcus horikoshii OT3

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Pyrococcus horikoshii sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent at the Okinawa Trough.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Measuring genome evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Archaeal genomics: do archaea have a mixed heritage?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Prokaryotic genomes: the emerging paradigm of genome-based microbiology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Archaea and the prokaryote-to-eukaryote transition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Genome plasticity as a paradigm of eubacteria evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

A Genomic Perspective on Protein Families

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Deletions at stalled replication forks occur by two different pathways

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi: evidence for rolling-circle replication in a hyperthermophile

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Conservation of chromosomal arrangement among three strains of the genetically unstable archaeon Halobacterium salinarium

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Hyperrecombination in the terminus region of the Escherichia coli chromosome: possible relation to nucleoid organization.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Archaebacterial genomes: eubacterial form and eukaryotic content

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Characterization of genetic elements required for site-specific integration of Lactobacillus delbrueckii subsp. bulgaricus bacteriophage mv4 and construction of an integration-proficient vector for Lactobacillus plantarum

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Phylogenetic test of the molecular clock and linearized trees

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Distinguishing Homologous from Analogous Proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Rearrangement of the bacterial chromosome: forbidden inversions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Complete nucleotide sequence of the virus SSV1 of the archaebacterium Sulfolobus shibatae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Ability of a bacterial chromosome segment to invert is dictated by included material rather than flanking sequence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Testing for equality of evolutionary rates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Genome sequence comparison and scenarios for gene rearrangements: a test case

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

SSV1-encoded site-specific recombination system in Sulfolobus shibatae.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311118

Non-orthologous gene displacement

25 October 2018

1 reference

12 December 2020

Bacterial Mode of Replication with Eukaryotic-Like Machinery in a Hyperthermophilic Archaeon

1 reference

12 December 2020

Conserved Gene Clusters in Bacterial Genomes Provide Further Support for the Primacy of RNA

1 reference

12 December 2020

The evolutionary relationships between the two bacteria Escherichia coli and Haemophilus influenzae and their putative last common ancestor

1 reference

12 December 2020

Sensitivity of the relative-rate test to taxonomic sampling

1 reference

12 December 2020

Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles

1 reference

12 December 2020

Archaeal and bacterial hyperthermophiles: horizontal gene exchange or common ancestry?

1 reference

12 December 2020

Universal Protein Families and the Functional Content of the Last Universal Common Ancestor

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.GR1653R

1 reference

5 August 2017

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5 August 2017

1 reference