(Q35051446)

6 August 2017

title

De novo characterization of the Anthurium transcriptome and analysis of its digital gene expression under cold stress (English)

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6 August 2017

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Dan-Qing Tian

1

1 reference

6 August 2017

Xiao-Yun Pan

2

1 reference

6 August 2017

Yong-Ming Yu

3

1 reference

6 August 2017

Wei-Yong Wang

4

1 reference

6 August 2017

Fei Zhang

5

1 reference

6 August 2017

Ya-Ying Ge

6

1 reference

6 August 2017

Xiao-Lan Shen

7

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6 August 2017

Fu-Quan Shen

8

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6 August 2017

Xiao-Jing Liu

9

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6 August 2017

language of work or name

English

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publication date

25 November 2013

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6 August 2017

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6 August 2017

volume

14

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6 August 2017

page(s)

827

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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Identification of differentially expressed genes in cucumber (Cucumis sativus L.) root under waterlogging stress by digital gene expression profile

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

The Gene Ontology: enhancements for 2011

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

KEGG for integration and interpretation of large-scale molecular data sets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Plant responses to cold: Transcriptome analysis of wheat

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

A novel MYBS3-dependent pathway confers cold tolerance in rice

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Comparison of next generation sequencing technologies for transcriptome characterization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Identification of genes associated with cold acclimation in perennial ryegrass

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Cold stress regulation of gene expression in plants.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Regulatory gene candidates and gene expression analysis of cold acclimation in winter and spring wheat

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Transcriptome analysis of cold acclimation in barley albina and xantha mutants

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

PLANT COLD ACCLIMATION: Freezing Tolerance Genes and Regulatory Mechanisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

PLANT CELLULAR AND MOLECULAR RESPONSES TO HIGH SALINITY.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

The cold-regulated transcriptional activator Cbf3 is linked to the frost-tolerance locus Fr-A2 on wheat chromosome 5A

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

New members of a cold-responsive group-3 Lea/Rab-related Cor gene family from common wheat (Triticum aestivum L.).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

The COG database: new developments in phylogenetic classification of proteins from complete genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Detection of eukaryotic promoters using Markov transition matrices.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046746

Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A.

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-827

Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-827

Structure and function of a transcriptional network activated by the MAPK Hog1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-827

Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-827

Rapid transcriptome changes induced by cytosolic Ca2+ transients reveal ABRE-related sequences as Ca2+-responsive cis elements in Arabidopsis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24267953

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24267953

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of leaf proteins differentially accumulated during cold acclimation between Festuca pratensis plants with distinct levels of frost tolerance

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24267953

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-14-827

1 reference

6 August 2017

1 reference

6 August 2017

1 reference